Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g03
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   2.1  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   8.3  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   8.3  

>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 159 KLFAYIFKL*KGSKKNMECLKDNLSIFSKTLICGYLL 49
           +L    FKL +      +C K N+S+F  T + GY++
Sbjct: 50  RLSLLYFKLTEAISFTEKCEKYNISLFDSTFVFGYIV 86


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 193 RSSLENQRITLKY*EVDAQRRIHFKKQKN-YRFHLLPLMSGFVFN-IIKILKIKRNAY 360
           RS L N+ I+++   +DA    HF KQ+  Y       +   +++  ++I+ +K + Y
Sbjct: 93  RSDLSNETISVRLAGIDAPESAHFGKQEQPYALEAKEFLHNKLYHKSVRIIPLKIDRY 150


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 361 IYYLQINISVHFQVHHMTSIIN 426
           IY++Q+N +  F V + T+++N
Sbjct: 44  IYFIQLNTTSIFSVANQTAVVN 65


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 363 LLSTNKYICTFSSASYDF 416
           LL++NK++  F  A YDF
Sbjct: 105 LLNSNKFLSAFGPAFYDF 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,125
Number of Sequences: 5004
Number of extensions: 33316
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)