Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28g03
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 151 CVHF*AMKRIKEKYGMFKRQFINIFKNSHLWIFVNK 44
           C H+   K   + Y + K Q    F  +HL  +V K
Sbjct: 574 CRHYLDAKSSVQNYSLAKHQLKEAFVKAHLGSWVKK 609


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 313 FVFNIIKILKIKRNAYIY 366
           F FNIIK + +K   Y Y
Sbjct: 507 FTFNIIKFVPVKYLTYEY 524


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 313 FVFNIIKILKIKRNAYIY 366
           F FNIIK + +K   Y Y
Sbjct: 560 FTFNIIKFVPVKYLTYEY 577


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 85  NIFKNSHLWIFVNKNECYYLFNI 17
           +IF  + LW   N NE  Y++++
Sbjct: 122 DIFFKTALWAKNNINEAQYIYSL 144


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 85  NIFKNSHLWIFVNKNECYYLFNI 17
           +IF  + LW   N NE  Y++++
Sbjct: 122 DIFFKTALWAKNNINEAQYIYSL 144


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 319 TQSPTSEAEGGIYXXXXXXXXXXFEHQ 239
           T+   +EAEGGIY           E+Q
Sbjct: 310 TRGEHTEAEGGIYDISNKRRLGLTEYQ 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,728
Number of Sequences: 438
Number of extensions: 2402
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)