Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f23
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.050
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 31 0.11
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 31 0.15
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 1.1
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.9
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 26 4.3
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 4.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 5.7
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 9.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.050
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Frame = +1
Query: 289 ENNKMETEKEAEDVNSMEIRQRKEKK-------ELQAQIQXXXXXXXXXXXXXXXXXXEI 447
E NK + E+E + + E ++ K+K+ E Q + E
Sbjct: 578 EENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEA 637
Query: 448 SRLESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEE 627
+ E ++ +E + +L + E + R K K + + R+K + ++++REEE
Sbjct: 638 RKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEE 697
Query: 628 IK 633
K
Sbjct: 698 EK 699
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 496 EAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDKENV 654
+AKL E E + R +K K+ + +++RDKK + + +EEE + ++ E +
Sbjct: 569 QAKLLEEIEEENKRKQERELK-KIREKEKKRDKKKQLKLAKEEERQRREAERL 620
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = -2
Query: 383 IWACNSF--FSLRCLISILFTSSASFSVSILLFST*REY*FYFVLKRYGYWL*FNLFHTH 210
+W SF FS+ C I+ + S+S +++ +F Y +L G + F+ F T
Sbjct: 401 LWRPFSFWLFSIFCTIAAYYLVSSSTKITVFIF-------LYLMLTFIG--IIFSTFMTS 451
Query: 209 MSVE--TTYSVNNKKEYINTVLIVHFNITTILSILFI 105
E +Y + +K +I+ V ++F+++ +++IL +
Sbjct: 452 EDAELVLSYDLMSKSLFISVVSTLNFSLSFVVAILLV 488
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 31.1 bits (67), Expect = 0.15
Identities = 30/119 (25%), Positives = 51/119 (42%)
Frame = +1
Query: 274 YSRQVENNKMETEKEAEDVNSMEIRQRKEKKELQAQIQXXXXXXXXXXXXXXXXXXEISR 453
Y R +N + EK A S +I++RK+ L +++ E+
Sbjct: 27 YQRVKQNIVEKREKHALSTTSTKIKKRKDA--LSKKVKQGIKVNKGKLSFGEDE--ELEN 82
Query: 454 LESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEI 630
+ L+ K M S++ + P D R I+ +A+ R+ EQE+IRE+EI
Sbjct: 83 DDLPLKKVEKKMFMGKDPSADTSFLP--DAEREIRENAKRAEYRKQWLKEQEQIREKEI 139
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +1
Query: 556 KTKVSKAQRRRDKKSEQEKIREEEIKLQDK 645
K K S +++R+ S++E+ ++++IKL+DK
Sbjct: 206 KDKESSSKKRKSGSSDKEEKKKKKIKLKDK 235
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/121 (16%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 286 VENNKMETEKEAEDVNSMEIRQRKEKKELQAQIQXXXXXXXXXXXXXXXXXXEISRLESE 465
++N +KE + V+ + +++RK++KEL++ ++R +
Sbjct: 74 MQNEIDRLKKEGDKVSILLMQERKKRKELESAKNNLLNVYDSLKMQKASVSSMVNRKQ-- 131
Query: 466 LEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDK-KSEQEKIREEEIKLQD 642
R KE + + E + +++E + +K ++ + + ++ SE E+ +++ L++
Sbjct: 132 ---RAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEE 188
Query: 643 K 645
+
Sbjct: 189 E 189
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 472 IRHNKEIMEAKLSSEHN-LEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDKE 648
+R+ E ++ L +++ + + E + ++ S+ Q + SEQ I +++I+ E
Sbjct: 96 LRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNE 155
Query: 649 NVH 657
N H
Sbjct: 156 NSH 158
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 274 YSRQVENNKMETEKEAEDVNSMEIRQRKEK 363
+ R ++ T KEA D+N +++RK+K
Sbjct: 375 HGRLLKVTSAVTRKEASDINQKSLQERKQK 404
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/117 (18%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +1
Query: 304 ETEKEAEDVNSMEIRQRKEKKELQAQI-QXXXXXXXXXXXXXXXXXXEISRLESELEIRH 480
+ +++++ + + +QR+E KELQ++I +IS++E++L +H
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKH 76
Query: 481 NKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDKEN 651
E + E E ++ ++ T + + + + +E+ ++ L KEN
Sbjct: 77 ATERQKLDKGDEETNETQQED--LLNTLLQQMEDTKITTAEKSSVQS---SLNTKEN 128
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 487 EIMEAKLSS-EHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDKENVHGA 663
E +E ++S NL+ + R +K + K++++ + S+ E + EEI KE H A
Sbjct: 545 EELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNEDLSKLEVEKVEEIANLKKELTHLA 604
Query: 664 R 666
+
Sbjct: 605 K 605
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 442 EISRLESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIRE 621
EI+RL S+LE K+ E + +E KTK + + + ++KS++ K E
Sbjct: 1569 EIARLRSQLE--STKQYYEKEKETEILAARSELVAEKEKTK-EELENQLNEKSQRIKELE 1625
Query: 622 EEIKLQDKENVH 657
E+ + EN H
Sbjct: 1626 EQAQKNSSENTH 1637
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +1
Query: 460 SELE-IRHNKEIMEAKLSSEH-NLEPMVDETRVIKTKVSKAQRRRDK----KSEQEKIRE 621
SELE ++ +E KLSS + N+E + +E +++K+ + + RDK + E EKI+
Sbjct: 244 SELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYRFEEYRDKVATLELENEKIQT 303
Query: 622 E 624
E
Sbjct: 304 E 304
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 556 KTKVSKAQRRRDKKSEQEKIREEEIKLQDKENVH 657
KT+ +K + + KK+ +EKI + + + K +VH
Sbjct: 91 KTEKAKVKPKAKKKNSKEKISKSSKQDEHKTDVH 124
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 571 KAQRRRDKKSEQEKIREEEIKLQDKENVH 657
K ++ + S+ E ++ EE KLQ+K N H
Sbjct: 632 KEEQLNAQLSQLENLQNEERKLQEKVNEH 660
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +1
Query: 442 EISRLESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIRE 621
E + E E ++R ++I K+ LE + R+ ++ + QRR++++ ++ + +E
Sbjct: 103 ERQQREQEKKLREQEKIAAKKMKELEKLE----KERI---RLQEQQRRKEERDQKLREKE 155
Query: 622 EEIKLQDKENVHGAR 666
E +L+ ++ ++ R
Sbjct: 156 EAQRLRQEQILNKER 170
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 457 ESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKL 636
E+E E N+E E + E + E DE+ + K ++ RR + ++ E+E +L
Sbjct: 102 ENEEEADANEEEEEDEEDDEEDEEDE-DESGGGRRKRARHDRRNQFLDIEAEVDEDEEEL 160
Query: 637 QDKENVHG 660
+D+E+ G
Sbjct: 161 EDEEDEIG 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,304
Number of Sequences: 5004
Number of extensions: 30334
Number of successful extensions: 122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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