Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f19
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4BVS1 Cluster: Molybdenum import ATP-binding protein; ...    36   0.96 
UniRef50_Q8I5T8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q7MJB4 Cluster: Transcriptional regulator; n=1; Vibrio ...    33   6.7  
UniRef50_A3WH47 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q9F3X1 Cluster: PadR protein; n=2; Pediococcus pentosac...    33   8.9  

>UniRef50_A4BVS1 Cluster: Molybdenum import ATP-binding protein;
           n=1; Nitrococcus mobilis Nb-231|Rep: Molybdenum import
           ATP-binding protein - Nitrococcus mobilis Nb-231
          Length = 353

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 27/70 (38%), Positives = 36/70 (51%)
 Frame = +1

Query: 367 RVRSDKASAIPTLTSFGKT*LLNVMPYLVLKKLGDSGKKPGKTFVRKRKNDILQICRLHS 546
           RVR+   S   TL   G+T +LNV+P  VL+   DS   PG+  VR R  D + + R+  
Sbjct: 275 RVRARDVSL--TLDPPGRTSILNVLPAQVLETAADS---PGQHLVRLRIEDQILLSRISE 329

Query: 547 LYYRKLKKMP 576
           L  R L   P
Sbjct: 330 LSQRHLCLQP 339


>UniRef50_Q8I5T8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1831

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 464 LETVEKNLA-RHSFENEKTTFYRFAGFTHCTIAS*KRCPRTKECNNDRELHGRRN*ICNI 640
           L  VEKN+A    + N+K  F        CTI S     +T +C  +    G+ N + NI
Sbjct: 25  LNCVEKNVAYEEKYLNKKKHFDSLLDLKFCTIKSRNIFIKTNKCEQNFREKGKYNSLSNI 84

Query: 641 TREY 652
           + +Y
Sbjct: 85  SNDY 88


>UniRef50_Q7MJB4 Cluster: Transcriptional regulator; n=1; Vibrio
           vulnificus YJ016|Rep: Transcriptional regulator - Vibrio
           vulnificus (strain YJ016)
          Length = 308

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/77 (31%), Positives = 39/77 (50%)
 Frame = -1

Query: 696 YMKLLTRYHY*HFPLYSLVMLQIQFLLPCSSRSLLHSLVLGHLFQLAIVQ*VKPANL*NV 517
           ++ ++T  H   + +YS     +QF+LP    S+ HS  +G LF   ++  V+ A+  N 
Sbjct: 232 FVAMVTNTHSNPYGIYS----DVQFVLPSDVDSIFHSRTIGFLFVELLLFLVQKASRNND 287

Query: 516 VFSFSNECLARFFSTVS 466
            F    E L +FF T S
Sbjct: 288 NFEELEE-LFKFFGTFS 303


>UniRef50_A3WH47 Cluster: Putative uncharacterized protein; n=1;
           Erythrobacter sp. NAP1|Rep: Putative uncharacterized
           protein - Erythrobacter sp. NAP1
          Length = 355

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 27/71 (38%), Positives = 35/71 (49%)
 Frame = -3

Query: 514 FFVFERMSCQVFFHCLQVFLAPGMALHSIAMFCQSL*ASV*LKPCLTLHDTSSGYFATIS 335
           FF F R     FF  L +FL  G+ L S   FC  L   + L  CL L      +FA ++
Sbjct: 117 FFRFGRGFALGFF--LSLFLGLGLCLASGLFFCFFL--GLCLSFCLGLR---LRFFACLT 169

Query: 334 ISFFFCFAVGY 302
           + FFF FA G+
Sbjct: 170 LGFFFRFAFGF 180


>UniRef50_Q9F3X1 Cluster: PadR protein; n=2; Pediococcus
           pentosaceus|Rep: PadR protein - Pediococcus pentosaceus
          Length = 176

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 436 VMPYLVLKKLGDSGKKPGKTFVRKRKNDILQICRL-HSLYYRKLKKM 573
           V+PY++L  L  +G   GK  + + K DI +   + HS  Y +L++M
Sbjct: 6   VLPYIILGLLNKNGMMSGKDMISEFKTDISEFWTVSHSQLYPELQRM 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,659,261
Number of Sequences: 1657284
Number of extensions: 10918988
Number of successful extensions: 22879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22877
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)