Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f19
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    28   1.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   2.6  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   4.5  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   7.9  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   7.9  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 367 DTSSGYFATISISFFFCFAVGYTLR*LRLPSIIELSLKCL 248
           +T  GYF  ++ SFFF    GY    L L S I     CL
Sbjct: 189 ETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCL 228


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 54  LRYYVLSPTKILIVICMNYNVKKYLE*LQFPDNKV 158
           LR+Y   PTKI I I   + +   L    FPDN++
Sbjct: 298 LRWYEYDPTKIFIYIASLFGLAYNLN--TFPDNEI 330


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 207 CFLVFQLFINFVNIIVILYYRETVITPNIFLHCNSY 100
           CF + Q  + ++ +++ +YY   VI   +FL C ++
Sbjct: 210 CFYLVQYIVAYIAMLLAMYYNGYVI---LFLFCGTF 242


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 PRTKECNNDRELHGRRN*ICNITREYN 655
           P T+E +N+  L+G  N   NI+R  N
Sbjct: 183 PNTREASNNTYLYGFSNNFINISRTLN 209


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 449 RYGITFNSYVLPKLVSVGIAEALSDLTRH*LGIFRYHFYKFFLLFRCRIHASVT 288
           RY     S+++ +L+   + + L+ L    +G  R+ FY     F  + HA++T
Sbjct: 177 RYPALSISFIVAQLILFPLGKLLNLLPNWKIGYGRFSFYLNSSPFNVKEHAAIT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,062
Number of Sequences: 5004
Number of extensions: 51494
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)