Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f18
         (411 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KF04 Cluster: BH0695 protein; n=2; Bacillus|Rep: BH06...    33   1.7  
UniRef50_Q6ZSW7 Cluster: CDNA FLJ45157 fis, clone BRAWH3042996; ...    32   4.0  
UniRef50_A5AK08 Cluster: Putative uncharacterized protein; n=1; ...    31   6.9  
UniRef50_A0DKA1 Cluster: Chromosome undetermined scaffold_54, wh...    31   9.1  

>UniRef50_Q9KF04 Cluster: BH0695 protein; n=2; Bacillus|Rep: BH0695
           protein - Bacillus halodurans
          Length = 169

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 235 NSSVFKSKTVQIILQQKGARAVDSRNTMTFRMFTESMIVDSWCGP 101
           NS +FK++  Q+I +    R  D+   + F+MFTE+  + +W GP
Sbjct: 3   NSMIFKAEGNQLIAE----RVFDAPRELVFKMFTEAEHLKNWWGP 43


>UniRef50_Q6ZSW7 Cluster: CDNA FLJ45157 fis, clone BRAWH3042996;
           n=1; Homo sapiens|Rep: CDNA FLJ45157 fis, clone
           BRAWH3042996 - Homo sapiens (Human)
          Length = 131

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 275 VSITLTGLILIDYTLLLQNYLNSLVFKNCKI 367
           +SI LTG+I   Y ++LQN LNSL FK  KI
Sbjct: 73  ISIFLTGVIFC-YLIVLQNALNSLPFKLFKI 102


>UniRef50_A5AK08 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 150

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 162 EIR*HFECLPSR*SLIHGAV-----PTIFTIQHGHANTIFDGL 49
           E R  FE  P + SL HG +     P++FTIQ   A  IFDGL
Sbjct: 22  ESRCPFEPAPDKGSLSHGPLSDTSKPSMFTIQFMKARQIFDGL 64


>UniRef50_A0DKA1 Cluster: Chromosome undetermined scaffold_54, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_54, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1450

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 26/93 (27%), Positives = 45/93 (48%)
 Frame = -3

Query: 349  NKTVQIVLQQKGVIYQN*AS*SNRNLIFPQ*RLLLNNINSSVFKSKTVQIILQQKGARAV 170
            NKT+QI+L     I Q+     N+N +  Q +L+     +S+FK  T+QI+ +Q    AV
Sbjct: 1120 NKTIQIILSDFKEIIQS----LNKNQLLQQLKLV-----NSIFK--TIQIVFKQMLMCAV 1168

Query: 169  DSRNTMTFRMFTESMIVDSWCGPNHIYDSTWAC 71
            + R     ++F+    +    G  + +D    C
Sbjct: 1169 ELRQDDYTQIFSALRKIYKQIGAQNFFDELTMC 1201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,380,100
Number of Sequences: 1657284
Number of extensions: 6348366
Number of successful extensions: 13148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13147
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)