Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f18
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   1.1  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   1.5  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   1.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   2.6  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   3.5  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   3.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   6.1  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 99  TIFTIQHGHANTIFDGLLFHDRTARICL 16
           TIF +   H N  F G++  D  AR+ L
Sbjct: 140 TIFIVYSPHPNETFQGIVLADHVARLVL 167


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 250 LLNNINSSVFKSKTVQIILQQKGARAVDSRNTMTFRMFTESMIVDS 113
           L+N+++S++FK  T Q  L  K   A  S+N +TF      + +++
Sbjct: 98  LINSLSSNMFK--TGQNPLAPKPEEAKQSKNKVTFEAINRDLAIET 141


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 182 CTSGGLAKYDDISNVYRVDDR*FMVRSQPYLRFNMGMQILYLMGFYFTI 36
           CTSG L   D ++ V   D     +  Q  +RF    +IL  +G+   I
Sbjct: 68  CTSGYLLSLDKMNKVVSFDPDSLSITVQAGIRFYQVQEILQNLGYSLPI 116


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 247 LNNINSSVFKSKTVQIILQQKGARAVDSRNTMT 149
           L NIN+ +F+ + + ++LQ  G   + S+   T
Sbjct: 787 LTNINNDMFRLRLIVVVLQTCGPSIIRSKTKKT 819


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 283 YFNWLNFDRLHPFVAELFE 339
           ++NWL  +R+H ++A   E
Sbjct: 284 FYNWLGHERIHVYIARCAE 302


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 212 DCSNNSATKGCTSGGLAKYDDISNVY 135
           D S +SA    TSG ++ YDD    Y
Sbjct: 116 DSSTSSARSSSTSGSISLYDDYYPAY 141


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 238 INSSVFKSKTVQIILQQKGARAVDSRNTMTFRMFTESMIVDSWCGPNH 95
           I+S+  KS+ V++      ++ VD R+T   R      +VD     NH
Sbjct: 32  ISSASHKSEHVEVSQSSSDSKNVDGRSTSEKRKVESVKLVDESKHNNH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,216
Number of Sequences: 5004
Number of extensions: 28719
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)