Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f18
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical
           protein M7.2 protein.
          Length = 516

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 230 FSFQKQDCSNNSATKGCTSGGLAKYDDISNVYRVDDR 120
           F  +++D +NN A +GC S   +  + ISN Y++  R
Sbjct: 166 FGPEEEDQNNNQADQGCRSSSFS--NPISNDYQLPTR 200


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 GPHHESTIIDSVNIRNVIVFRESTARAP 185
           G   +  IIDS NI N + F E+  RAP
Sbjct: 137 GKEIKFAIIDSANIANRVKFPEAPRRAP 164


>AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2D.1 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -2

Query: 254 FITQ*HKFFSFQKQ---DCSNNSATKGCTSGGL 165
           F+ + + F SF  Q   DC+ +    GC  GGL
Sbjct: 213 FLAKLNMFLSFSDQEMCDCATDGTKAGCAGGGL 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,593,628
Number of Sequences: 27780
Number of extensions: 159017
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)