Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f17
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   7.0  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   9.3  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 534 SQATTYLSKAAPRYISLCSC 593
           S  + +L K+ P YIS C+C
Sbjct: 13  SNTSAFLVKSKPLYISFCTC 32


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 456 ETMSRANKMLLSRVAVLQSTVPYASSSQATTYLSKAAPRYIS 581
           E +  +N  L +++  +   VP A+S+ A  YLS    RY++
Sbjct: 217 EEVGFSNISLSTKLMPMIKYVPRATSATADAYLSPVVRRYLA 258


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 182 EKQHGPSPHGNIGGHVGQKEVEHILNSEILFCRLMSFVIFF 60
           EK H    H ++ G++G+   +HIL          SF  +F
Sbjct: 451 EKSHTRIEHWDVAGNLGRVAADHILFGNKAGYTTKSFTPYF 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,597
Number of Sequences: 5004
Number of extensions: 39100
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)