Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f17
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF125963-2|AAD14743.1|  463|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +1

Query: 265 PICRPSPAPLLPDIMPPIVPV---LPCCK 342
           P C P PAP  P   PP  P    L CCK
Sbjct: 108 PCCPPPPAPAAPCCPPPPPPTPSPLVCCK 136


>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
           protein F54F12.1 protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 262 KPICRPSPAPLLPDIMPPIVPVLP 333
           KP   P+P P+LP ++P   PV+P
Sbjct: 772 KPDDPPAPLPVLPPVVPAPAPVVP 795


>AF125963-2|AAD14743.1|  463|Caenorhabditis elegans Hypothetical
           protein Y38A10A.2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  F*IQNVFHLFLSHMPTNITMWARTM 173
           F I N  H +LSH+  N T+W++++
Sbjct: 160 FSIHNTDHCYLSHIFVNNTIWSKSL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,790
Number of Sequences: 27780
Number of extensions: 222591
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)