Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f16
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...   156   3e-39
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    97   2e-21
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    27   2.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.3  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score =  156 bits (378), Expect = 3e-39
 Identities = 69/141 (48%), Positives = 100/141 (70%), Gaps = 4/141 (2%)
 Frame = +2

Query: 314 PFTLPTNRQVSSIPRAMPD---GSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDI 484
           P  LPT R++S+IP+ + +   G  E W+YPSQQMF++AM RK W     +  P+DM  I
Sbjct: 42  PTMLPTEREISTIPKVVTESDSGKEEKWIYPSQQMFFDAMKRKNW-----NPHPEDMKTI 96

Query: 485 IRIHNANNEQAWQEVLKWE-ALHAKECGHPRLKSFGGKATQYSPRARIRSWLGYELPFDR 661
           + IHNA NE+AWQ++L+WE    +++CG P+L+ F G   + +P+ARI + LGY  PFDR
Sbjct: 97  VPIHNAVNERAWQDILQWEQGWGSEKCGGPKLERFDGNVKKLTPKARILNLLGYNKPFDR 156

Query: 662 HDWIVDRCGKDVRYIIDYYDG 724
           HDW+V+RCG+ V Y+ID+Y+G
Sbjct: 157 HDWLVNRCGRKVAYVIDFYNG 177


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 63/148 (42%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
 Frame = +2

Query: 308 DQPFTLPTNRQVSSIPRAMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDII 487
           DQ   L T R  SSIP+   DG    W YPS Q  +NAM RKG+R   E++       ++
Sbjct: 199 DQVVGLETTRTTSSIPKV--DGKN--WEYPSPQQMYNAMWRKGYRDSGENV-----PIMV 249

Query: 488 RIHNANNEQAWQEVLKWEALHAKECGHPRLKSFGGKATQYSPRA-------RI--RSWLG 640
           ++HN  NE AW E+  WE   A E   P+L  F G A + +PRA       RI    W  
Sbjct: 250 QVHNFLNEGAWSEIKAWER-EAGENTEPKLLRFEGNANKRTPRALWYMMLGRINPNRWGS 308

Query: 641 YELPFDRHDWIVDRCGKD-VRYIIDYYD 721
            E PFDRHDW V R     VRY+IDYY+
Sbjct: 309 GEGPFDRHDWYVQRKDNSIVRYVIDYYE 336



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 176 NPPPECPMHNKTEQ 217
           NPPP CPMH  + +
Sbjct: 83  NPPPGCPMHKASNE 96



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 173 VNPPPECPMHNKTEQKPKVSE 235
           V PP  CPM N  ++   VSE
Sbjct: 119 VQPPATCPMSNSNQKPAGVSE 139


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 324 CLQTDKFPLFLEQCLMAQLNSGFIQVNKCFGMLCCVKAGV 443
           CL +  F LFLE+  + QL S F  +N C  ++    A +
Sbjct: 602 CLNSQGFDLFLEKNPIPQLFSIFTSLNHCKSLISSDNAAI 641


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 600 LNIVLEHVYVLGLG--MSYHSTVMTGLWTDVGRTCAISLI 713
           +NI   +++ L LG  +++H   + GLW  +G+  A+S++
Sbjct: 383 VNITAYYLFALPLGIYLAFHGKGLVGLW--IGQVIALSIV 420


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 EAHVNIKIGEK-DVNPPPECPMHNKTEQKPKVSECPVQHGNDINP 268
           E +V  +I +K  ++  P+  M  K  +KPKVSE    H  +I+P
Sbjct: 104 EDNVEQEIKQKRSLSESPQESMLEKVSKKPKVSEA---HNEEISP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,547
Number of Sequences: 5004
Number of extensions: 72059
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)