Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f16
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    33   0.23 
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    28   6.6  
06_03_1348 - 29497084-29497384,29497464-29497634,29497717-294985...    28   8.7  

>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 371 GSTEFWVYPSQQMFW-NAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKWEAL 547
           G    ++ PS  +FW  +   K  +W      P+D DD  R+H  ++ +A+ EV+K  +L
Sbjct: 547 GMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSL 606


>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 179 PPPECPMHNKTEQKPKVSECPVQHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 358
           PPP  P +++ +  PK SE     G   NP               P  LP +R++ + P 
Sbjct: 31  PPPPPPPNDRDDASPKPSE-----GEGRNPAASLFQDLRDRLMSTPSHLP-SRRIPTAPP 84

Query: 359 AMPDGSTE 382
             P G+ E
Sbjct: 85  PRPSGNAE 92


>06_03_1348 -
           29497084-29497384,29497464-29497634,29497717-29498549,
           29498631-29499092,29499171-29499904,29499993-29500122
          Length = 876

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +2

Query: 479 DIIRIHNANNEQAWQEVLKWEALHAKECGHPRLKSFG--GKATQYSPRARIRSWL---GY 643
           DI ++  A  E+AW  + KW    A+E    + K+F   GKA +         ++   G 
Sbjct: 116 DIGKVTEAEKERAWTAMEKWFTFPAEEKDRLKWKAFQKMGKAWKNWKSKLFTEYVNPPGN 175

Query: 644 ELPFDRHDWIVD 679
             PFD +  I +
Sbjct: 176 HTPFDEYPQITE 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,282
Number of Sequences: 37544
Number of extensions: 488034
Number of successful extensions: 1282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)