Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f16
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U36787-1|AAB19007.1| 268|Homo sapiens holocytochrome c-type syn... 235 2e-61
BC095455-1|AAH95455.1| 268|Homo sapiens holocytochrome c syntha... 235 2e-61
BC001691-1|AAH01691.1| 268|Homo sapiens HCCS protein protein. 235 2e-61
AF053015-1|AAC35274.1| 268|Homo sapiens putative holocytochrome... 235 2e-61
AB065616-1|BAC05843.1| 312|Homo sapiens seven transmembrane hel... 31 3.2
>U36787-1|AAB19007.1| 268|Homo sapiens holocytochrome c-type
synthetase protein.
Length = 268
Score = 235 bits (574), Expect = 2e-61
Identities = 110/183 (60%), Positives = 132/183 (72%), Gaps = 6/183 (3%)
Frame = +2
Query: 194 PMHNKTEQKPKVSECPV-----QHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 358
P H E+ + ECP+ ++ +++P DQPF L T R+ SSIPR
Sbjct: 54 PAHQ--ERAYEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPR 111
Query: 359 AMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKW 538
A S + WVYPS+QMFWNAML+KGW+WKDEDI KDM +IIRIHN NNEQAW+E+LKW
Sbjct: 112 A---DSEKKWVYPSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKW 168
Query: 539 EALHAKECG-HPRLKSFGGKATQYSPRARIRSWLGYELPFDRHDWIVDRCGKDVRYIIDY 715
EALHA EC P L FGGKA +YSPRARIRSW+GYELPFDRHDWI++RCG +VRY+IDY
Sbjct: 169 EALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDY 228
Query: 716 YDG 724
YDG
Sbjct: 229 YDG 231
>BC095455-1|AAH95455.1| 268|Homo sapiens holocytochrome c synthase
(cytochrome c heme-lyase) protein.
Length = 268
Score = 235 bits (574), Expect = 2e-61
Identities = 110/183 (60%), Positives = 132/183 (72%), Gaps = 6/183 (3%)
Frame = +2
Query: 194 PMHNKTEQKPKVSECPV-----QHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 358
P H E+ + ECP+ ++ +++P DQPF L T R+ SSIPR
Sbjct: 54 PAHQ--ERAYEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPR 111
Query: 359 AMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKW 538
A S + WVYPS+QMFWNAML+KGW+WKDEDI KDM +IIRIHN NNEQAW+E+LKW
Sbjct: 112 A---DSEKKWVYPSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKW 168
Query: 539 EALHAKECG-HPRLKSFGGKATQYSPRARIRSWLGYELPFDRHDWIVDRCGKDVRYIIDY 715
EALHA EC P L FGGKA +YSPRARIRSW+GYELPFDRHDWI++RCG +VRY+IDY
Sbjct: 169 EALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDY 228
Query: 716 YDG 724
YDG
Sbjct: 229 YDG 231
>BC001691-1|AAH01691.1| 268|Homo sapiens HCCS protein protein.
Length = 268
Score = 235 bits (574), Expect = 2e-61
Identities = 110/183 (60%), Positives = 132/183 (72%), Gaps = 6/183 (3%)
Frame = +2
Query: 194 PMHNKTEQKPKVSECPV-----QHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 358
P H E+ + ECP+ ++ +++P DQPF L T R+ SSIPR
Sbjct: 54 PAHQ--ERAYEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPR 111
Query: 359 AMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKW 538
A S + WVYPS+QMFWNAML+KGW+WKDEDI KDM +IIRIHN NNEQAW+E+LKW
Sbjct: 112 A---DSEKKWVYPSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKW 168
Query: 539 EALHAKECG-HPRLKSFGGKATQYSPRARIRSWLGYELPFDRHDWIVDRCGKDVRYIIDY 715
EALHA EC P L FGGKA +YSPRARIRSW+GYELPFDRHDWI++RCG +VRY+IDY
Sbjct: 169 EALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDY 228
Query: 716 YDG 724
YDG
Sbjct: 229 YDG 231
>AF053015-1|AAC35274.1| 268|Homo sapiens putative holocytochrome
c-type synthetase protein.
Length = 268
Score = 235 bits (574), Expect = 2e-61
Identities = 110/183 (60%), Positives = 132/183 (72%), Gaps = 6/183 (3%)
Frame = +2
Query: 194 PMHNKTEQKPKVSECPV-----QHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 358
P H E+ + ECP+ ++ +++P DQPF L T R+ SSIPR
Sbjct: 54 PAHQ--ERAYEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPR 111
Query: 359 AMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKW 538
A S + WVYPS+QMFWNAML+KGW+WKDEDI KDM +IIRIHN NNEQAW+E+LKW
Sbjct: 112 A---DSEKKWVYPSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKW 168
Query: 539 EALHAKECG-HPRLKSFGGKATQYSPRARIRSWLGYELPFDRHDWIVDRCGKDVRYIIDY 715
EALHA EC P L FGGKA +YSPRARIRSW+GYELPFDRHDWI++RCG +VRY+IDY
Sbjct: 169 EALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDY 228
Query: 716 YDG 724
YDG
Sbjct: 229 YDG 231
>AB065616-1|BAC05843.1| 312|Homo sapiens seven transmembrane helix
receptor protein.
Length = 312
Score = 31.5 bits (68), Expect = 3.2
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -1
Query: 303 AGCWLAG---GIMLNGL-ISFPCCTGHSETFGFCSVLLCIGHSGGGFTSFSPIFILT*AS 136
+GCW G G ML + +SFP C H FC V + S TS IF+
Sbjct: 146 SGCWFVGSVDGFMLTPIAMSFPFCRSHEIQHFFCEVPAVLKLSCSD-TSLYKIFMYLCCV 204
Query: 135 ADTLFPICMSYVS 97
L P+ + VS
Sbjct: 205 IMLLIPVTVISVS 217
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,784,432
Number of Sequences: 237096
Number of extensions: 2612615
Number of successful extensions: 5284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5274
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -