Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f13
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    28   0.90 
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    28   0.90 
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   0.90 
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   2.7  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   4.8  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 4   QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 183
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 184 RPSL 195
           R  L
Sbjct: 86  RGML 89


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 441 ITSNSR*IHRY-KLKTIVYTEIITCFLVQKAPENNVQYTVVSYASKEPLEHSF 286
           I SN   + R+ K KT+  TEI+  F V     N      +  ASK+ LE++F
Sbjct: 23  IASNGPDVMRWRKDKTVPLTEIVDSFQVFTTSNNKGNEGQLITASKQELENTF 75


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 4   QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 183
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 184 RPSL 195
           R  L
Sbjct: 86  RGML 89


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 305 SFDAYETTVYWTLFSGAFCTKKQVIISVYTIVFNLYLCIYLL 430
           SF+ YET+   +LF+G         I++ T++  LY  + ++
Sbjct: 37  SFEKYETSFLKSLFNGNLGLSLPSAINILTLIIVLYFSLVIV 78


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 358 LYQKTGYNFSIYNRL*LIPMYLSTIRCYW 444
           L  +  +N  +Y R  LI +++S   CYW
Sbjct: 830 LLPRNFWNSKLYTRKDLISIHISLAMCYW 858


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 177 FLIHLYNLWFLKASVTWF 124
           FLI L  +WF  A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,436
Number of Sequences: 5004
Number of extensions: 40820
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)