Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f13
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    31   0.61 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.61 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.61 
U80024-8|AAK18887.3|  288|Caenorhabditis elegans Serpentine rece...    27   10.0 

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 133  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 44
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8632 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8661


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 133  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 44
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 133  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 44
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>U80024-8|AAK18887.3|  288|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 9 protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 344 FSGAFCTKKQVIISVYTIVFNLY 412
           FS  F T   VI SV+TI  N+Y
Sbjct: 12  FSAVFVTSIGVICSVFTIFMNIY 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836,184
Number of Sequences: 27780
Number of extensions: 220861
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)