Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f12
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 287 1e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 156 3e-39
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 155 8e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 151 1e-37
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 36 0.008
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 30 0.38
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.5
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 6.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 6.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 8.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 287 bits (703), Expect = 1e-78
Identities = 128/183 (69%), Positives = 145/183 (79%)
Frame = +1
Query: 133 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 312
MREIVHIQ GQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 313 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 492
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 493 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPSPKVSDTVV 672
R+EAE CD LQGFQ +SKIREEYPDR+M TFSV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 673 EPY 681
EPY
Sbjct: 181 EPY 183
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 156 bits (378), Expect = 3e-39
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 2/185 (1%)
Frame = +1
Query: 133 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLER--INVYYNEATGGK 306
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 307 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 486
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 487 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPSPKVSDT 666
+R+ A+ C LQGF + ++ EY + FSV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 667 VVEPY 681
VVEPY
Sbjct: 181 VVEPY 185
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 155 bits (375), Expect = 8e-39
Identities = 69/185 (37%), Positives = 115/185 (62%), Gaps = 3/185 (1%)
Frame = +1
Query: 136 REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 315
REI+ +Q GQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 316 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 489
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 490 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVP-SPKVSDT 666
+ +EA+G D L+GF + ++ + YP +I+ T+SV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 667 VVEPY 681
VV+PY
Sbjct: 182 VVQPY 186
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 151 bits (365), Expect = 1e-37
Identities = 74/189 (39%), Positives = 107/189 (56%), Gaps = 6/189 (3%)
Frame = +1
Query: 133 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 294
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 295 TGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 474
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 475 SVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPSPK 654
SVL+ +R+ A+ C LQGF + ++ EY + FSV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 655 VSDTVVEPY 681
VS +VVEPY
Sbjct: 181 VSTSVVEPY 189
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 149 ISKEVNAETRL-GLSSGKLYPMSMASIRPERITETPTSSWSASTCTITRRLEES 307
+ + E RL L GKL P+ A ++ ++ TS++S +T +T+ EES
Sbjct: 388 LENRIRVENRLRSLEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 288 VIVHVDALQLEVGVSVIRSGRID--AMLIGYNFPELSPNLVSALTSL 154
+ V D +L +S S +ID A IG FP +SPNL S++ L
Sbjct: 66 IFVPFDKCKLASSISSSPSPKIDGTAASIGMGFPPMSPNLQSSIPRL 112
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 367 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 468
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 172 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 273
N++G EV++++ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 436 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 525
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -1
Query: 240 IRSGRIDAMLIGYNFPE----LSPNLVSALTSLDMN 145
++ G + + ++FP+ L P+L+S L+++DMN
Sbjct: 102 VQLGEVIGYIANFDFPDRWDTLLPDLISKLSAVDMN 137
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 490 LHRAQNLPALRLRCSDP*PSCCQHPIAQRQSC 395
L +A LP R +C D PSCC + +SC
Sbjct: 474 LTQAHLLP--RTQCVDTPPSCCGGHCCKEESC 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,317
Number of Sequences: 5004
Number of extensions: 57632
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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