Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f11
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   1.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   1.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   5.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   5.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   7.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   9.8  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +1

Query: 181 RYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 360
           R+  +S F+  T D      GS     +   +  N++    +          K SG++YL
Sbjct: 67  RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126

Query: 361 NYSPP 375
           +  PP
Sbjct: 127 SRIPP 131


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  KCFLSMILIRFDYSFSNFNSAYCVIQ 89
           K F++ + IRF YSF++ N A CVI+
Sbjct: 410 KEFINPLNIRFAYSFNDINQA-CVIE 434


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 154 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 243
           +R FQ  + RY    E   KP  ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -2

Query: 278 RRWLASWCD--CHEPLGTGNSSMVGG 207
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 223 HPWWGA*SDFRHGSDALF 170
           +P+W   SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 218 WMNYQCPKAHGSRT 259
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 163 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 291
           F+  +R Y+G   +K  T+D+L V   + Q HH  +  ++  V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,682
Number of Sequences: 5004
Number of extensions: 31512
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)