Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f09
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 83 5e-17
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 55 8e-09
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 3.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.4
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 25 7.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.4
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 25 9.8
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 82.6 bits (195), Expect = 5e-17
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Frame = +2
Query: 140 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 319
Y+A+ F Q YY FD + R+ L ++Y E S ++FEG QLQG I+EKL SL FQ+
Sbjct: 4 YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60
Query: 320 ITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 493
+ ++ +D+QP G V++ V G L DE+ Y Q F L ++YV +D+FRL
Sbjct: 61 VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 55.2 bits (127), Expect = 8e-09
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +2
Query: 143 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLT 310
D IG FVQ+YYT + R + Y +++ + E + L G +I K+ L
Sbjct: 16 DEIGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLD 73
Query: 311 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 490
FQ +++ VDS +GG++I VLG + + QTF L + ++V +DIFR
Sbjct: 74 FQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133
Query: 491 LGIHDI 508
D+
Sbjct: 134 FLREDV 139
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.26
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Frame = +2
Query: 11 NKQNKFSSPFSSVRHILNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLFD 190
N N F SP + R +LN+ A LF GVT + A++ YD + FV+ + + D
Sbjct: 267 NGSNGFISPKNLTRDLLNYKANSTLFGGVTIWDTSL-AAMS--YDNSSETFVEAIHKILD 323
Query: 191 DPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLT--------FQKITRIVTAVD 346
++ ++ + ++ + + L I +S + Q T+ VT+V
Sbjct: 324 TKSKHSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTSSAISTISQDHTKTVTSVS 383
Query: 347 SQP 355
+P
Sbjct: 384 DEP 386
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 501 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 322
W + K C + SP G N+++ +YR + F++P I GW TI+
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436
Query: 321 I 319
I
Sbjct: 437 I 437
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 447 FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 340
F+ C+Y S F+ R L+ PPS I +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 158 GFVQQYYTLFDDPAQRANLVNMYNVETSFMTFE-GVQLQGAVKIMEKLNSLTFQ 316
GF+Q+ YT+FD + + N ++E + T+ G+ + GA + NS ++
Sbjct: 219 GFIQEDYTVFDGSSIKD---NCSSIEITQWTYNIGLYMAGAAYMYNYTNSTVWK 269
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 619 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 521
E + +M +L +LY ISN LSI+ + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 520 KDRHNTKKCLT*NLI 564
KD HNTKKCL LI
Sbjct: 259 KDDHNTKKCLAQLLI 273
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 147 ASYCGLSAI*IKMCLFVTPTKSPIPAEKFKM 55
+ Y + AI I+ C F+T ++PIP + F +
Sbjct: 21 SKYQSIYAIQIR-CFFLTVNRTPIPKQTFSL 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,416
Number of Sequences: 5004
Number of extensions: 60587
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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