Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f07
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   5.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.8  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 662 HLPTGRVHVGCWN 624
           H+    VH+GCWN
Sbjct: 361 HMGGDEVHLGCWN 373


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 298 AIARYNSNSPCKGRTENTK*STATDPSTASIGYL 399
           A A Y+S+SP     +++  S +T P+     Y+
Sbjct: 31  APAAYSSSSPSGSSPQHSSSSASTSPAARMYPYV 64


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 298 AIARYNSNSPCKGRTENTK*STATDPSTASIGYL 399
           A A Y+S+SP     +++  S +T P+     Y+
Sbjct: 31  APAAYSSSSPSGSSPQHSSSSASTSPAARMYPYV 64


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  LFNPVRLSVRRYEIPEHLRAIVDDP 143
           L NP   ++  Y+ P+H+  +V DP
Sbjct: 6   LMNP-GTALPTYQQPQHISGVVVDP 29


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  LFNPVRLSVRRYEIPEHLRAIVDDP 143
           L NP   ++  Y+ P+H+  +V DP
Sbjct: 6   LMNP-GTALPTYQQPQHISGVVVDP 29


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 648 TCSRRVLERRCRHRYN 601
           TC  + LE +C+  YN
Sbjct: 778 TCDAKYLEIKCKRIYN 793


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  LFNPVRLSVRRYEIPEHLRAIVDDP 143
           L NP   ++  Y+ P+H+  +V DP
Sbjct: 6   LMNP-GTALPTYQQPQHISGVVVDP 29


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 330 QRKNGEYEMIHGYRSQHSVHRLPCKGGIRFS 422
           + +N E+   H     HSV   P     RFS
Sbjct: 31  KNQNTEHNYTHNNEMYHSVKEEPIYESCRFS 61


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  LFNPVRLSVRRYEIPEHLRAIVDDP 143
           L NP   ++  Y+ P+H+  +V DP
Sbjct: 6   LMNP-GTALPTYQQPQHISGVVVDP 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,080
Number of Sequences: 336
Number of extensions: 4301
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)