Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f07
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 72 7e-14
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 27 3.6
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 4.8
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 26 4.8
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 4.8
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.4
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 8.4
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 8.4
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 72.1 bits (169), Expect = 7e-14
Identities = 41/126 (32%), Positives = 64/126 (50%)
Frame = +3
Query: 276 ILKVMGSCNSSLQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKAL 455
+L ++ L+F + G + GYR Q + P KGG+RF VNL +K L
Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94
Query: 456 AALMTYKCACSNIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAP 635
+K A + +P GG KGG +PK + E++R ++ + +L + YIG DVPA
Sbjct: 95 GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPAG 152
Query: 636 DVNTSG 653
D+ +G
Sbjct: 153 DIGVTG 158
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 402 KGGIRFSDQVNLEEVKALAALMTYKCACSNIPFGGSKGGV 521
KGG F + + A + T C S +PFG GG+
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 147 PSFYRMVEYFYHNAVKVCEPSLEEYLKKYTHL 242
P + + YFY K C ++ +LKK+ ++
Sbjct: 130 PILFIAIFYFYETWTKACGKGIKHFLKKWRNM 161
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -2
Query: 275 SGDPLLSLLIRQMSVFLQILLEAWFANFNRVVIEVLDHPVKTGIRVIDYSSQMLR 111
SG+ L +L I + Q+LLE +AN NR+ + + +R +D S+ L+
Sbjct: 862 SGNELANLSISSTA---QVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQ 913
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Frame = +3
Query: 177 YHNAVKVCEPSLEEYLKKYTHLSDKKR-----KQRVSGIL---KVMGSC----NSSLQFE 320
+ ++ V + ++ E+ K+ HLS K+ + S L ++ C N+ L
Sbjct: 33 FTKSLAVLDDNVSEFRKRMNHLSATKQILDNFNESFSSFLYGLQINAFCVDYENAPLSES 92
Query: 321 FPLQRKNGEYEMIHGYRSQHSVHRLPCKGGI 413
F LQ K +++ R+ HS+ P GG+
Sbjct: 93 FLLQAKKDQFKATLMTRTGHSISDPPYDGGV 123
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Frame = +3
Query: 6 NLTDIR*KMFVKTHKINLLNKLFNPVRLSVRRYEIPEHLRAIVDDPDP-------SFYRM 164
+L D+ + + HK N +NK+++ V+ ++R E E A+ D D S +
Sbjct: 1465 SLKDVNDRKYKWKHKQNAMNKVYDLVQSAIR--ESSEDAIALAVDCDSEAMEKLRSTTTL 1522
Query: 165 VEYFYHNAVKVCEPSLEEYL----KKYTHLSDKKRKQ 263
E + ++ C S EY+ KK L+++ +K+
Sbjct: 1523 DEESWKRLIESCPASQREYMQRLQKKLVTLAEQDKKR 1559
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 528 NPKQYTIAELQRITRRYTLELAKKNY 605
N + + +LQ+ITR Y + L +K Y
Sbjct: 421 NNQSFNSCQLQKITRGYWISLQQKEY 446
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 227 LQILLEAWFANFNRVVIEVLDHPVKTGIRVIDYSSQMLRYFV 102
+Q+ L WF+ F +L+HPVK I ID + L FV
Sbjct: 244 VQVCLFCWFSFF------ILNHPVKQRIFSIDNPDEYLVPFV 279
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 466 IRAASAFTSSKFTWSENLMPPLQGNRWTLCWDL*PW 359
+++ +A T+ TW + L L NR T DL PW
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPW 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,638
Number of Sequences: 5004
Number of extensions: 70457
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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