Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f07
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 118 5e-27
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 113 2e-25
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 111 4e-25
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 75 6e-14
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 30 2.2
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 29 5.0
01_07_0182 + 41838805-41839152,41839230-41839610 29 5.0
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852 29 5.0
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 6.6
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 28 8.8
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 118 bits (284), Expect = 5e-27
Identities = 57/131 (43%), Positives = 86/131 (65%)
Frame = +3
Query: 309 LQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAALMTYKCACS 488
++ E + + +G G+R QH R P KGGIR+ +V+ +EV ALA LMT+K A +
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94
Query: 489 NIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAPDVNTSGREMSW 668
NIP+GG+KGG+ +P +I+EL+R+TR +T ++ + IG DVPAPD+ T+ + M+W
Sbjct: 95 NIPYGGAKGGIGCSPGDLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAW 152
Query: 669 IVDTYIKTLGY 701
I+D Y K GY
Sbjct: 153 ILDEYSKFHGY 163
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 113 bits (271), Expect = 2e-25
Identities = 55/131 (41%), Positives = 85/131 (64%)
Frame = +3
Query: 309 LQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAALMTYKCACS 488
++ E + + +G G+R QH R P KGGIR+ +V+ +EV ALA LMT+K A +
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 489 NIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAPDVNTSGREMSW 668
IP+GG+KGG+ P + + +EL+R+TR +T ++ + IGA DVPAPD+ T+ + M+W
Sbjct: 95 AIPYGGAKGGIGCAPGELSTSELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAW 152
Query: 669 IVDTYIKTLGY 701
I+D Y K G+
Sbjct: 153 ILDEYSKFHGH 163
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 111 bits (268), Expect = 4e-25
Identities = 53/131 (40%), Positives = 84/131 (64%)
Frame = +3
Query: 309 LQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAALMTYKCACS 488
++ E + + +G G+R QH R P KGGIR+ +V+ +EV ALA LMT+K A +
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 489 NIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAPDVNTSGREMSW 668
+P+GG+KGG+ P + + +EL+R+TR +T ++ + IG DVPAPD+ T+ + M+W
Sbjct: 95 AVPYGGAKGGIGCTPGELSRSELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAW 152
Query: 669 IVDTYIKTLGY 701
I+D Y K G+
Sbjct: 153 ILDEYSKFHGH 163
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 74.9 bits (176), Expect = 6e-14
Identities = 44/129 (34%), Positives = 62/129 (48%)
Frame = +3
Query: 315 FEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAALMTYKCACSNI 494
F P GE + G+R Q S PC+GG+RF + L K LA T K A S
Sbjct: 251 FRVPWVDDRGEAHVNRGFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQY 310
Query: 495 PFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAPDVNTSGREMSWIV 674
GG+ GG +PK + +E+ R + + EL + Y+G D PA DV REM ++
Sbjct: 311 KLGGAAGGSDFDPKGKSESEIMRFCQSFMDELYR--YLGPDQDFPAEDVGVGPREMGYLF 368
Query: 675 DTYIKTLGY 701
Y + G+
Sbjct: 369 GQYRRLSGH 377
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 189 VKVCEPSLEEYLKKYTHLSDKKRKQRVSGILKVMGSCNSSLQFEFPLQRKNGEYEMIHGY 368
+ +C P ++E +KK ++K+R RV I +G + EFP EY+ I
Sbjct: 476 ILICAPKIKEIIKKKYGENNKRRALRVLSISDDLGQEIPAKDLEFPFV----EYDKILVA 531
Query: 369 RSQHSVHRLPCKGG 410
S L KGG
Sbjct: 532 TDNFSEASLIGKGG 545
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -2
Query: 326 GEFEL*RAIARAHYLQNSGDPLLSLLIRQMSVFLQILLEAWFANFNRVVIEVLDHPVKTG 147
G ++ RA+ + QN D SLL R+++V+L + A + V + L H K
Sbjct: 462 GPYKQFRAVDATSFDQNVFDNSNSLLDRRLNVYL-AKIRALLQKLSSVDLVGLSHQQKLA 520
Query: 146 IRVIDYSSQMLRYFV 102
+ Y+S M+ F+
Sbjct: 521 FWINTYNSCMMNAFL 535
>01_07_0182 + 41838805-41839152,41839230-41839610
Length = 242
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 135 DDPDPSFYRMV-EYFYHNAVKVCEPSLEEYLKKYTHLSDK 251
DD PS R + EY +AVK+ P EE + YT DK
Sbjct: 192 DDEYPSLQRWIKEYANIDAVKLSLPDREELVAFYTRNKDK 231
>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
Length = 259
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 335 EERRIRNDPRLQIPAQRPSVTL*RRH*IL*PSEFGGSESACG 460
EERR DP ++IPA + T R ++GGS S CG
Sbjct: 21 EERRPFTDP-IEIPAPSGAATARREDTEYGEGDYGGSGSGCG 61
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 429 VNLEEVKALAALMTYKCACSNIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYI 608
VNLEE + A K + + GG+ G+ I+PK TI + Y+++ + +YI
Sbjct: 547 VNLEEPLSWQAYNYAKVSFKIV--GGTLSGLTIDPKSVTIYPSVKAPVEYSMQASSGDYI 604
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +3
Query: 108 IPEHLRAIVDDPDPSF-YRMVEYFYHNAVK--VCEPSLEEYLKKYTHLSDKKRKQRVSGI 278
+P H R DD S R + F A+ + PS+E + + + + VS +
Sbjct: 285 LPSHSRGNQDDASTSSRIRKLSAFQRKALSHALSFPSVERVVYSTCSIHQAENEDVVSSV 344
Query: 279 LKVMGSCNSSLQFEFPLQRKNG 344
L + S L FP R+ G
Sbjct: 345 LPLASSLGFELATPFPQWRRRG 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,013,107
Number of Sequences: 37544
Number of extensions: 490735
Number of successful extensions: 1305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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