Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f07
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   230   7e-61
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical p...    31   1.1  
AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      29   3.4  
AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical...    29   4.5  
Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81474-6|CAH04697.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical ...    28   7.8  
AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical ...    28   7.8  
AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm rece...    28   7.8  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  230 bits (563), Expect = 7e-61
 Identities = 105/209 (50%), Positives = 149/209 (71%)
 Frame = +3

Query: 105 EIPEHLRAIVDDPDPSFYRMVEYFYHNAVKVCEPSLEEYLKKYTHLSDKKRKQRVSGILK 284
           ++ +  + + +  +PSFY+MV+++++   +V  P L E LK  + LS K +K  VSGIL 
Sbjct: 27  QVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKLAEELKSNS-LSQKDKKNLVSGILG 85

Query: 285 VMGSCNSSLQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAAL 464
            +   N  L   FP++R NGE+E+I  +R+QHS HR P KGGIR+S  V  +EVKAL+AL
Sbjct: 86  AIKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCEDEVKALSAL 145

Query: 465 MTYKCACSNIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPAPDVN 644
           MTYKCA  ++PFGG+KGGV I+PKQYT  E+++ITRR  +E AKK ++G G+DVPAPD+ 
Sbjct: 146 MTYKCAVVDVPFGGAKGGVKIDPKQYTDYEIEKITRRIAIEFAKKGFLGPGVDVPAPDMG 205

Query: 645 TSGREMSWIVDTYIKTLGYKDINAAACVT 731
           T  REM WI DTY +T+G+ D +A+AC+T
Sbjct: 206 TGEREMGWIADTYAQTIGHLDRDASACIT 234


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 93   VRRYEIPEHLRAIVDDPDPSFYRMVEYFYHNAVKVCEP 206
            +  Y +  ++RAIV + D +F+RM E+F +N V+   P
Sbjct: 1585 INYYPVQANIRAIVGNVDGNFHRMQEFFRNNIVRRAIP 1622


>U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical
           protein C15H9.9 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +3

Query: 192 KVCEPSLEEYLKKYTHLSDKKRKQRVSGILKVMGSCNSSLQFEFPLQRKNGEYEMIHGYR 371
           K C P  E   K    +  +K  Q V G+L V+  C  S +    L++       IH Y+
Sbjct: 46  KTCTPLTEGTFKGNAAVGCRKITQSVEGVLSVVRECAYSGEPVDGLKKTGNHAIRIHYYQ 105

Query: 372 SQHSVHRLPC 401
            ++     PC
Sbjct: 106 CENEKAGTPC 115


>AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical
           protein Y32F6B.1 protein.
          Length = 758

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 135 DDPDPSFYRMVEY-FYHNAVKVCEPSLEEYLKKYTHLSDKKRKQRVSGILKVMGSCNSSL 311
           D+      + VEY  YH   ++C+ +LE+Y+ +   ++D K     + +    G C+S L
Sbjct: 151 DEKSDLLQKYVEYCHYHKGSEICK-NLEKYIAEKFPITDAKMSNVRAMVALPYGFCHSML 209

Query: 312 QF 317
            F
Sbjct: 210 NF 211


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 45  HKINLLNKLFNPVRLSVRRYEIPEHLRAIVDDPDPSFYRMVEYFYHN 185
           HKI  + K+    RLSVR+  +  + RAIVD+ DP   R+V   +H+
Sbjct: 10  HKI--VEKVEPIERLSVRK--VCRNFRAIVDNKDPGIKRVVLNIHHS 52


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
           protein F26A3.8 protein.
          Length = 1601

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 150 SFYRMVEYFYHNAVKVCEPSLEEYLKKYTHLSDKKRKQRVSGILKVMGSCNSSLQFEFPL 329
           +F  ++ ++Y N  ++CE +LE+ +    HL D ++  R+  ILK +   +   Q    +
Sbjct: 396 NFLEIIIWYYRNDNQLCEAALEDLV----HLIDGRK--RIGSILKCL---DKICQKREVM 446

Query: 330 QRKNG--EYEMIHGYRSQHSVHRLPCK 404
           +  NG  E E I GY+    V   P +
Sbjct: 447 KLVNGLTEKESIEGYQRVRKVIFTPTR 473


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 150 SFYRMVEYFYHNAVKVCEPSLEEYLKKYTHLSDKKRKQRVSGILKVMGSCNSSLQFEFPL 329
           +F  ++ ++Y N  ++CE +LE+ +    HL D ++  R+  ILK +   +   Q    +
Sbjct: 396 NFLEIIIWYYRNDNQLCEAALEDLV----HLIDGRK--RIGSILKCL---DKICQKREVM 446

Query: 330 QRKNG--EYEMIHGYRSQHSVHRLPCK 404
           +  NG  E E I GY+    V   P +
Sbjct: 447 KLVNGLTEKESIEGYQRVRKVIFTPTR 473


>AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical
           protein F09G2.1 protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -3

Query: 592 ASSKVYLLVILCSSAIVYCFGFIA-----TPPLEPPNGMLEQAHLYVIRAASAFTSSKFT 428
           A +++ LL+ LC+ ++V C  F A     TP +  PN M   A+   +R      SS +T
Sbjct: 5   AYARLLLLLHLCTVSLVLCDQFCATDGNDTPIITDPNYMCNDANFTNLRNPPLQNSSSYT 64


>Z92785-5|CAB54232.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 AVKVCEPSLEEYLKKYTHLSDKKRKQRVS 272
           A  VCE  + E+ KKY H +D +R + +S
Sbjct: 72  APDVCERRITEFQKKYAHGTDAQRLELLS 100


>Z81474-6|CAH04697.1|  320|Caenorhabditis elegans Hypothetical
           protein C18D4.6c protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 AVKVCEPSLEEYLKKYTHLSDKKRKQRVS 272
           A  VCE  + E+ KKY H +D +R + +S
Sbjct: 72  APDVCERRITEFQKKYAHGTDDQRLELLS 100


>Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical
           protein C18D4.6a protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 AVKVCEPSLEEYLKKYTHLSDKKRKQRVS 272
           A  VCE  + E+ KKY H +D +R + +S
Sbjct: 72  APDVCERRITEFQKKYAHGTDDQRLELLS 100


>AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6b protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 544 VYCFGFIATPPLEPPNGMLEQAHLYVIRAASAFTSSKFTWSENLM 410
           V    +++  PLE  N  LE+   Y+I     F       S+NLM
Sbjct: 306 VLLHAYLSRLPLESQNDALEEDQSYIITRILRFVEEMVNCSQNLM 350


>AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6a protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 544 VYCFGFIATPPLEPPNGMLEQAHLYVIRAASAFTSSKFTWSENLM 410
           V    +++  PLE  N  LE+   Y+I     F       S+NLM
Sbjct: 306 VLLHAYLSRLPLESQNDALEEDQSYIITRILRFVEEMVNCSQNLM 350


>AL021504-3|CAB54474.2|  300|Caenorhabditis elegans Hypothetical
           protein F31E9.6 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 AVKVCEPSLEEYLKKYTHLSDKKRKQRVS 272
           A  VCE  + E+ KKY H +D +R + +S
Sbjct: 72  APDVCERRITEFQKKYAHGTDAQRLELLS 100


>AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical
           protein F38A1.15 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 513 GGVAINPKQYTIAELQRITRRYTLELAKKNYIGAG 617
           G ++ +  ++TI+    ITR Y L +  +N+IG+G
Sbjct: 181 GQISSSQHRFTISFYNTITRFYPLYVEVRNFIGSG 215


>AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 153 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 354 MIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKALAALMTYKCACSNIPFG 503
           +I GYRS   + +L  +G   ++ ++ ++  KAL A         + P G
Sbjct: 220 LIFGYRSYKKISKLMAQGECDYTKRLQMQLYKALVAQTIIPMVLLSFPIG 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,654,577
Number of Sequences: 27780
Number of extensions: 406617
Number of successful extensions: 1176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)