Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f07
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.42 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 YRMVEYFYHNAVKVCEPSLEEYLK 227
           + +VE+ YH  V V + SL  +LK
Sbjct: 82  HALVEFIYHGEVNVHQRSLSSFLK 105


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 141 PDPSFYRMVEYFYHNAVKVCE-PSLEEYLKKYT 236
           PDP+  R ++  Y N   +CE P + +Y   Y+
Sbjct: 203 PDPAINRRLKETYSNMCALCEKPEVCDYPDIYS 235



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 526 IATPPLEPPNGMLEQAHLYVIRAASAFTSSKFTW 425
           +  PP+ P N +    +L VI   S  T     W
Sbjct: 355 VPAPPVLPENHLKNAKYLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 141 PDPSFYRMVEYFYHNAVKVCE-PSLEEYLKKYT 236
           PDP+  R ++  Y N   +CE P + +Y   Y+
Sbjct: 203 PDPAINRRLKETYSNMCALCEKPEVCDYPDIYS 235



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 526 IATPPLEPPNGMLEQAHLYVIRAASAFTSSKFTW 425
           +  PP+ P N +    +L VI   S  T     W
Sbjct: 355 VPAPPVLPENHLKNAKYLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 141 PDPSFYRMVEYFYHNAVKVCE-PSLEEYLKKYT 236
           PDP+  R ++  Y N   +CE P + +Y   Y+
Sbjct: 203 PDPAINRRLKETYSNMCALCEKPEVCDYPDIYS 235



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 526 IATPPLEPPNGMLEQAHLYVIRAASAFTSSKFTW 425
           +  PP+ P N +    +L VI   S  T     W
Sbjct: 355 VPAPPVLPENHLKNAKYLDVIERNSGATDKIIRW 388


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 77  PCPVKC*ALRNTGAFESYSR 136
           P P +C   RN G  E+Y R
Sbjct: 35  PLPTECVFCRNNGEEEAYYR 54


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 561 RITRRYTLELAKK 599
           RI+RR+ LELA+K
Sbjct: 31  RISRRHLLELAEK 43


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 381 CAGICSRGSFRILRSSF 331
           C G+CS    R++R  F
Sbjct: 19  CVGLCSEDEERLVRDLF 35


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 428 SEFGGSESACGSYDIQM 478
           SEFGG     G++D+ +
Sbjct: 173 SEFGGITQCIGAFDVTL 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,219
Number of Sequences: 438
Number of extensions: 4922
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)