Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f04
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.9  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   7.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 332 DIKPHLIRNNIKVHFHGAPPESGDHDGLAAHLTDC 436
           D++ H+  N + +H+HG       +      +T C
Sbjct: 187 DVENHIEGNEVTLHWHGVWQRGSQYYDGVPFVTQC 221


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 332 DIKPHLIRNNIKVHFHGAPPESGDHDGLAAHLTDC 436
           D++ H+  N + +H+HG       +      +T C
Sbjct: 187 DVENHIEGNEVTLHWHGVWQRGSQYYDGVPFVTQC 221


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 351 SEIISRFTSTARHRKAETTMVWRLT*LTAHMSIQRHRRRNVNCAA 485
           S+II+   S A    A T  VW     T ++ + R +  N  C A
Sbjct: 79  SQIIANKQSGAAAPDARTQRVWSQYNFTNNVLVHRSQNSNDVCLA 123


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +2

Query: 137 DCGRNRPFTAKASGDAVACDLRRKETYDDN 226
           DC     F  K  G    CD   +  Y DN
Sbjct: 57  DCPNGLVFAGKNRGVTEGCDYPWRSNYCDN 86


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +2

Query: 191 CDLRRKETYDDNFKHHDKRSRSKNKIPKNVRNDLESALVGLCDVWFEDIKPHLIRNNIKV 370
           C    ++ Y ++    D   RS   I  N +    S  V L D    D+  HL  ++  +
Sbjct: 76  CPYNTQDCYREDCIPGDGNKRSI--IVVNRKMPGPSVEVCLGDEVIIDVVNHLSSDSTTI 133

Query: 371 HFHGAPPESGDHDGLAAHLTDC 436
           H+HG   ++  +      +T C
Sbjct: 134 HWHGHHQKNSPYMDGVPFVTQC 155


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 468 NVNCAACCSRQPTVSKARCRRL 533
           NV+C      +P +S   C RL
Sbjct: 77  NVDCGDRTQLEPPISSPHCERL 98


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 468 NVNCAACCSRQPTVSKARCRRL 533
           NV+C      +P +S   C RL
Sbjct: 77  NVDCGDRTQLEPPISSPHCERL 98


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 474 NCAACCSRQPTVSKARCRRLSTPSAQPVPPPQM 572
           N  +   R+  VS+      S  SA P PPPQ+
Sbjct: 203 NGKSSAKRKQLVSEHPDSPNSKKSATPSPPPQL 235


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 555 LAELMALTACDTALSILLAASNSKRHNSH 469
           ++ ++    CD A S L   SN    NSH
Sbjct: 544 VSAVLTCKVCDQAFSSLKELSNHMVKNSH 572


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 474 NCAACCSRQPTVSKARCRRL 533
           NCA C  +Q T +    +RL
Sbjct: 71  NCAKCTEKQRTAAYRSIKRL 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,903
Number of Sequences: 336
Number of extensions: 3596
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)