Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28f04
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormo... 31 0.64
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 31 1.1
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 30 1.5
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 30 1.9
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 4.5
AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical ... 29 4.5
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 5.9
AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical... 28 5.9
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.8
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 28 7.8
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 28 7.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.8
>AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 83 protein.
Length = 717
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 637 CVFCDSPLHLRCLGVVSCR 581
CV CD P H R GV+SCR
Sbjct: 369 CVICDQPSHGRHFGVLSCR 387
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 450 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 599
QRHR + QP A +TPSA+P PP + P + + P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 450 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 599
QRHR + QP A +TPSA+P PP + P + + P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 639 YVFFAILLYIYDVSALSAVGTAASVA 562
+ FFA+L IYD S LS +G+ VA
Sbjct: 394 FAFFAVLFIIYDFSILSLLGSFTGVA 419
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 495 RQPTVSKARCRRLSTPSAQPVPPPQML-PSLQLTTPRHRKCKGESQKTHISSKSKYDWRV 671
++ TV AR L TP P+P ++ PS T + + S++ S+ S RV
Sbjct: 275 KKDTVELARIESLETPPLSPIPEDEIKEPSPSKTNQKLNRSNSRSEERRGSTNSTVSHRV 334
Query: 672 PR 677
R
Sbjct: 335 NR 336
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 637 CVFCDSPLHLRCLGVVSCR 581
CV C P H R GV+SCR
Sbjct: 11 CVICGQPSHGRHFGVLSCR 29
>AF016447-3|AAG24018.1| 349|Caenorhabditis elegans Hypothetical
protein C54F6.8 protein.
Length = 349
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 652 DFDEICVFCDSPLHLRCLGVVSC 584
DF+++C C P R G VSC
Sbjct: 13 DFEKVCTVCRRPAFTRYYGAVSC 35
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 206 KETYDDNFKHHDKRSRSKNKIPKNVRND 289
K T+D + K + RSRS+++ PK R D
Sbjct: 37 KRTHDRDRKRNRSRSRSRSRSPKRSRRD 64
>AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical
protein Y39G10AR.15 protein.
Length = 704
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 498 QPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTPRHRKCKGESQKTHISSKSKYD 662
+P + + +L P A+P PPP +P ++ + ++ K K + T K D
Sbjct: 126 RPKLEPEQPEKLERPLARPQPPPPAIPVVKKISKQNTKDKKSGRITDRKIHKKKD 180
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 500 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 402
LP S + ++P TL ++ SQ + PDH G
Sbjct: 391 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 423
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 500 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 402
LP S + ++P TL ++ SQ + PDH G
Sbjct: 297 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 329
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 500 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 402
LP S + ++P TL ++ SQ + PDH G
Sbjct: 391 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 423
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 600 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 448
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 1234 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 1284
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 600 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 448
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 1234 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 1284
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 619 PLHLRCLGVVSCRDGS 572
P H RC GV C DGS
Sbjct: 471 PFHTRCNGVAECSDGS 486
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 500 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 402
LP S + ++P TL ++ SQ + PDH G
Sbjct: 297 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 329
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 600 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 448
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 817 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 867
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 450 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLT 593
+R RRN N + + + S + R S+PS P PPP PS LT
Sbjct: 1307 RRGNRRNTNEHIQANHEDSDSFSTSRS-SSPSPPPPPPPPPPPSDDLT 1353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,943
Number of Sequences: 27780
Number of extensions: 357499
Number of successful extensions: 1506
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -