Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f04
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 155 PFTAKASGDAV-ACDLRRKETYDDNFKH--HDKRSRSKNKIPKNVRNDLESALVGL 313
           P   K S D   +   + K   +D+ +H  H   + S+N +P+ +  D+ SAL G+
Sbjct: 399 PLELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPRYLSPDVISALKGV 454


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 440 HVDPASSAAQCELCRLLFEAANSIES 517
           H  P +SA  C LC  +F   NS+ +
Sbjct: 395 HFQPLNSAV-CALCHKVFRTLNSLNN 419


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 649 FDEICVFCDSPLHLRCLGVVSCRDGS-ICGG 560
           F E C    S   +   G+ S RD S ICGG
Sbjct: 327 FKETCRCSPSNPSITRTGLSSVRDSSIICGG 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 723  DEERQREINCYMC 685
            D +R+R  +CY+C
Sbjct: 1059 DSDRERLYDCYVC 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,790
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)