Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f03
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    32   0.093
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    29   0.66 
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    27   2.6  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   6.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   6.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.1  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 31.9 bits (69), Expect = 0.093
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 236 RARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRI-SSRVLDEMERLKRLILVGK 412
           +  LE H+ S +    D++ + ++EE++    E+N+ + I   R L E  +   L  V K
Sbjct: 72  KEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK 131

Query: 413 TP 418
            P
Sbjct: 132 KP 133


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 302 ELEERIRAVNEENLNKRISSRVLD 373
           E+E   R V+E+  N RISSR+LD
Sbjct: 301 EIETTKRVVDEDTSNARISSRILD 324


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -2

Query: 496 SCNFPVNHSPEHKYWVVEKFRRTLL*RGFSNKDQSFQSFHL--IKHSARDSFVQIFFVDS 323
           S +FP  +  E   W ++KF++ L     ++ DQ    F +  I  S  ++F +I   + 
Sbjct: 23  SVDFPGYYFDEDNIWDLDKFKKNLK-VSITSLDQETMVFEISGIDASIANAFRRILIAEI 81

Query: 322 SNSFFQFGHVV 290
               F+F +++
Sbjct: 82  PTLAFEFVYII 92


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 260 PCASPAAHGRAGGQRHIVSLLPATSEANWAVEI 162
           P  S    GR GGQ +I SLL   +E    VE+
Sbjct: 176 PDLSCVVRGRHGGQDYIYSLLTGYTEPPAGVEV 208


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 CGSRTRTT*PNWKK 314
           CGS T+ T PNW+K
Sbjct: 271 CGSPTQATMPNWEK 284


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 242  RLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLILVGKTPL 421
            RL +  G   V   +  Y++EL E I   N+E  +      V+D +   +   L+  T L
Sbjct: 1196 RLSQFPGVQAVPYVNVQYLSELNEFIILANQEFWSVLSKRTVIDVVRANRHSPLLASTKL 1255

Query: 422  KE 427
            ++
Sbjct: 1256 RD 1257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,593
Number of Sequences: 5004
Number of extensions: 48770
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)