Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28f01
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08766-1|CAA70019.1|  638|Homo sapiens SF1-Bo isoform protein.         32   2.5  
L49345-1|AAB03514.1|  571|Homo sapiens transcription factor ZFM1...    32   2.5  
AY686224-1|AAT95434.1|  153|Homo sapiens voltage-gated sodium ch...    30   7.8  

>Y08766-1|CAA70019.1|  638|Homo sapiens SF1-Bo isoform protein.
          Length = 638

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 141 GETVEEAPWWTGWFG 97
           G   ++ PWWTGWFG
Sbjct: 621 GRQPQQRPWWTGWFG 635


>L49345-1|AAB03514.1|  571|Homo sapiens transcription factor ZFM1
           protein.
          Length = 571

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 141 GETVEEAPWWTGWFG 97
           G   ++ PWWTGWFG
Sbjct: 554 GRQPQQRPWWTGWFG 568


>AY686224-1|AAT95434.1|  153|Homo sapiens voltage-gated sodium
           channel Nav1.9 protein.
          Length = 153

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 648 YIKWCEYKKSCTKIMTYTWFELKKNIVFINILLCYSFQIFT*F*NHDAKLSTKKQTNKYL 469
           ++ W   +K+C +I+ ++WFE    I+F+ ILL     IF      D  L  + +T + L
Sbjct: 78  WVIWWNLRKTCYQIVKHSWFE--SFIIFV-ILLSSGALIF-----EDVHLENQPKTQELL 129

Query: 468 N 466
           N
Sbjct: 130 N 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,273,961
Number of Sequences: 237096
Number of extensions: 2025108
Number of successful extensions: 4359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4358
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)