Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e24
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 240 DLRFWASDLL*PKLHVINSSRGSLKLTYNS 151
           D  +W  D+L   +H+ + S GS ++  NS
Sbjct: 162 DHTWWPYDILNCTIHIASWSHGSNEIKLNS 191


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 25  VNSVTADFEVFGKVQGVFFRKFTQKKALELGLK 123
           +NS+T + +V   V+         KKA  +G K
Sbjct: 866 INSITVEKDVINDVKTQITTNTPAKKATNIGGK 898


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 46 NPPLHYLLCSL 14
          NP LHYLL  L
Sbjct: 44 NPSLHYLLALL 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,522
Number of Sequences: 438
Number of extensions: 2253
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)