Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e19
         (289 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   2.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   8.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    19   8.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   8.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    19   8.0  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  LNITAKFCNCNKLACYLLLMDSIFXIT*KLDS 183
           LN++  +C C  +   +L   SI  +T  L+S
Sbjct: 41  LNLSINYCICGYIFSAILFSLSILGLTEDLNS 72


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 IIGRKTLLFLGTKLRILAI*FLCNXENTVHKQ 139
           +I + TLLF+ ++L+   +   CN +    KQ
Sbjct: 87  VISKGTLLFMTSQLKPDKVTVFCNRDLGREKQ 118


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 IIGRKTLLFLGTKLRILAI*FLCNXENTVHKQ 139
           +I + TLLF+ ++L+   +   CN +    KQ
Sbjct: 87  VISKGTLLFMTSQLKPDKVTVFCNRDLGREKQ 118


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 IIGRKTLLFLGTKLRILAI*FLCNXENTVHKQ 139
           +I + TLLF+ ++L+   +   CN +    KQ
Sbjct: 87  VISKGTLLFMTSQLKPDKVTVFCNRDLGREKQ 118


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 IIGRKTLLFLGTKLRILAI*FLCNXENTVHKQ 139
           +I + TLLF+ ++L+   +   CN +    KQ
Sbjct: 87  VISKGTLLFMTSQLKPDKVTVFCNRDLGREKQ 118


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 183 LKYVTSCLKKATSYGQ*CIYTNSY 254
           LK+VT  LKK     Q  +Y   Y
Sbjct: 177 LKFVTDTLKKELEKLQKIVYLRDY 200


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 242 VDTLLAVRRCFF*ARSYVF*LSNFYVIXKILSISNK*QASLLQLQNFAV 96
           +   L VR  F   + +    ++  V  ++ S SN+     LQ QNF++
Sbjct: 265 IHNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTPLKLQPQNFSI 313


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 4/8 (50%), Positives = 8/8 (100%)
 Frame = +2

Query: 140 CLWTVFSK 163
           C+W++F+K
Sbjct: 56  CIWSIFNK 63


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 242 VDTLLAVRRCFF*ARSYVF*LSNFYVIXKILSISNK*QASLLQLQNFAV 96
           +   L VR  F   + +    ++  V  ++ S SN+     LQ QNF++
Sbjct: 261 IHNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTPLKLQPQNFSI 309


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 185 KIRNFVPKKSNVLRPIMYLH 244
           K RNF  + S +L    Y H
Sbjct: 233 KRRNFSKQASEILNEYFYSH 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,206
Number of Sequences: 336
Number of extensions: 1105
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)