Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e19
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   2.9  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   3.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   8.8  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    23   8.8  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 179  IAKIRNFVPKKSNVLRPIMYLHQ 247
            +++ +N  PK S V RP+++L Q
Sbjct: 1645 VSEQQNVRPKSSGVSRPLLFLQQ 1667


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 94  CSN*HHLDRFNGTDSSIP 41
           CSN  HL+ F+   SSIP
Sbjct: 187 CSNKDHLENFDYLSSSIP 204


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +1

Query: 67  IYLDGANLNITAKFCNCNKL---ACYLLL 144
           +Y DGAN+N     C    +    C+L L
Sbjct: 739 VYFDGANMNAMVGLCKAGDIGADVCHLNL 767


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 134 IYCLWTVFSKLH 169
           +Y +WT FS+LH
Sbjct: 253 LYTIWTPFSELH 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,448
Number of Sequences: 5004
Number of extensions: 16356
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)