Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e16
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895...    31   0.49 
01_07_0114 + 41161923-41163251                                         27   6.0  
07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880     27   8.0  
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    27   8.0  
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    27   8.0  

>09_04_0746 -
           19888479-19888622,19888739-19888867,19889061-19889548,
           19889666-19889843,19889920-19889991,19890993-19891193
          Length = 403

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 200 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 93
           TN FQS  + S T   PP PP  D + + +SK  LP
Sbjct: 41  TNPFQSAAFSSTTTGDPP-PPTMD-SPIKVSKIILP 74


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 113 SPPHSCLQPEGSAVLLL*RSYISRTGKYSSQIYPITTESLRDS 241
           +PP  CL P     L+L  S +  TG+  +   P+    +RDS
Sbjct: 3   NPPIKCLLPPAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDS 45


>07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880
          Length = 366

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 161 KAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 54
           +A PP+P  E+  AV     +L  +    ++W+ FS
Sbjct: 100 RALPPSPAMEEETAVRAQGVYLYDKKEAPNAWFAFS 135


>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 212 PITTESLRDSKRRSEY 259
           P++TESL+ SKRRS +
Sbjct: 455 PLSTESLKSSKRRSSF 470


>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 188 QSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFSW*PYEINCL 27
           ++V   + T + PP    E++  + I   F       NSSW F S   +  +C+
Sbjct: 88  EAVPVPAQTSSLPPGVSREEQATIKIQTAFRGYLLSENSSWLFISSAAFIYHCV 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,432,460
Number of Sequences: 37544
Number of extensions: 150554
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)