Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e10
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    34   0.017
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.5  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    27   3.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.8  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    25   7.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +1

Query: 463 LGYRPRLNLLRTGRLSIVKLKRIRQCCILMGPL-RRTTLTFLHSELKLPRRSQVC----- 624
           L Y P     +   + I++ KR+R+ C L G L  R +   +  ELKLP + ++C     
Sbjct: 473 LRYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEELKLPPQHRICMTTRL 532

Query: 625 TGVEET*YTTMAS 663
           + VEET Y  + S
Sbjct: 533 SVVEETNYQDLLS 545


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 375 PKRHDARSHYFKEIRKDNLQL-YKRIVKAKARVQTTAELIEDWKTKHREIEKDTT 536
           P   D RS Y    ++    +  KR+V+ +    ++++L ED+K   RE+++  T
Sbjct: 210 PNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNT 264


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 315 KRQHFLRGKVDCNWLKLPVRPKRHDARS 398
           K +  L G+VDC W K P   K  D  S
Sbjct: 191 KSKLILAGEVDCIWDKKPCSAKESDVHS 218


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 109 YFLFKDSLEL--TFFNIAFNKVILYIICLNYCTLNFLL 2
           Y+ F   LE   TF +  F   + +I+CL YC+  F +
Sbjct: 412 YWKFTALLEASATFISYPFQS-LAFIVCLKYCSFYFFI 448


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 510 HREIEKDTTMLYPYGPLAEDHAYISTQRTEA 602
           HR++E + + L PY P  + + Y+     +A
Sbjct: 437 HRKLESELSHLPPYSPYRDSYFYLEDDDGDA 467


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 576 YISTQRTEATKKVPGLYWSGGDVIHDNGFG 665
           Y   QR      + G+  +GG+ +H N +G
Sbjct: 18  YPGLQRNSIPPNIDGIILAGGESVHPNRYG 47


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 291 NINLLFNIKRQHFL 332
           N+N+ FNI  QHFL
Sbjct: 282 NVNITFNIGEQHFL 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,700
Number of Sequences: 5004
Number of extensions: 55059
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)