Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28e10
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 30 2.0
12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186... 29 2.6
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.4
09_04_0242 + 15969091-15969128,15970172-15970409,15971439-159716... 28 7.9
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 28 7.9
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 28 7.9
>02_03_0143 +
15685242-15686298,15688167-15688265,15688998-15689072,
15689309-15689364,15689786-15689875
Length = 458
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 252 EQWTQQNRQIYATNINLLFNIKRQHFLRGKVDCNWLKLPVRPKRHDARSHYFKEIRKDNL 431
E+W ++ YA IN K + RGK+ NW +LP H + I +
Sbjct: 230 EKWLAESETKYAFPINFPTGFKIEKGFRGKLG-NWQRLPYTKAYEKNELHPIRNIER--- 285
Query: 432 QLYKRIV 452
L KRIV
Sbjct: 286 -LEKRIV 291
>12_02_1040 +
25616967-25617276,25618042-25618163,25618397-25618623,
25618708-25618885,25619054-25619197,25619448-25619669
Length = 400
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 393 RSHYFKEIRKDNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYP 548
+ H K RK+ LY+ +V+ + + K HR+++ + +L P
Sbjct: 192 KQHLIKHYRKNKKLLYEEVVRLALDLARGLSFLHSKKIVHRDVKSENMLLDP 243
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 378 KRHDARSHYFKEIRKDNLQLYKRIVKAKARVQTTAELIE 494
+ HD F E ++ N QLY++I +A+ ++ E +E
Sbjct: 1398 QEHDQTKKAFSEAQEINQQLYRKIEEAEKNIEQLRENVE 1436
>09_04_0242 +
15969091-15969128,15970172-15970409,15971439-15971668,
15972235-15972469,15973133-15973224,15973333-15973336
Length = 278
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 423 DNLQLYKRIVKAKARVQTTAELIEDWKTKHREIEKDTTMLYPYGPLAEDH 572
DNL + + +VK R + A L D KHRE+ T Y P+A DH
Sbjct: 90 DNLVVAQALVKVCERKKEVAILSVDVSLKHREL----TDAGEYPPVAFDH 135
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 202 WTRRLLDSVRRLCIVTSNSGRNKIGKFTRLTSTCC 306
W R +L+ +RR + ++ + GK T +S CC
Sbjct: 520 WVRFILECLRRKLKLVDSARESCFGKMTSSSSQCC 554
>03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 84 SSESLNRKYPSXXXXXXXXKTIKQRKRKHTHKYSSITAVVDTSPPRFSSAPMYRNFE 254
SS+S+N+K + + + ++KRK + SSI ++ P +A R+ +
Sbjct: 936 SSDSMNKKVTNNSSIVGAPEVVNEKKRKGDARNSSIGGELENQPVGSQNASRKRSLQ 992
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,796
Number of Sequences: 37544
Number of extensions: 355549
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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