Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28e01
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.4  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.6  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   7.5  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.5  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   9.9  

>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 IMAGTVVSCLKVVDVFTCSFTFLLAHAKKCCTKKVRL 123
           ++ G V   L +    TC + FLL HAK  C+  VRL
Sbjct: 140 VVWGVVCRALGLSLERTC-YLFLLGHAKSICSAAVRL 175


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 389 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 481
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVIENL 221


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 389 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 481
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVIENL 221


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 487 DSFNNHVLALVKFKPPKDIIFGCILTIISEFWTITA 594
           D  +N V +L+   PPKDI F  ++T    FW  ++
Sbjct: 267 DPADNTVASLIHALPPKDITFYLLMT----FWQFSS 298


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 389 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 481
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 155 NFANITYLRDNVWNLEHSVFAPHGDNVVENL 185


>SPCC1235.12c |mug146||meiotically upregulated gene
          Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 54 TPSFEFFKTENTHYLN 7
          TPS EFF  ENT+ L+
Sbjct: 30 TPSLEFFSNENTNRLS 45


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 529 PPKDIIFGCILTIISEFWTITAASCIDAIEELDSLDSFV 645
           P   +I  CI++I+  F T      +DA+  + ++ +F+
Sbjct: 403 PVNAVICNCIISILILFLTFAGTVTLDAVFSVGAVAAFI 441


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +1

Query: 304 KPSKKTRPTMRFFEYNQTESSFYELGIIQSGKLNISQAKS---TPDTISDILG----KDK 462
           +P +K         Y Q ++SF  L   Q+ + NIS   S   TP + S   G    K+K
Sbjct: 285 QPPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEK 344

Query: 463 KFDGEYAEDSF 495
            +  ++AE S+
Sbjct: 345 SYSQDHAELSY 355


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 289 IECTWKPSKKTRPTMRFFEYNQTESSFYELGI---IQSGKLNISQ 414
           +   WKP K   P  R ++ N + +S   +GI   I +GK  +++
Sbjct: 2   LRIVWKPLKIRLPVWRRYQSNISINSIRNVGIIAHIDAGKTTLTE 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,095
Number of Sequences: 5004
Number of extensions: 62266
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)