Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d24
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1015 + 8029884-8030676,8030755-8030771                           30   2.0  
11_06_0206 + 21201030-21201422                                         29   2.6  
09_04_0441 + 17626285-17626620,17626726-17626812,17627195-176272...    29   2.6  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    29   4.5  
11_01_0605 + 4821363-4823246                                           28   6.0  
03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321           28   7.9  
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842...    28   7.9  

>01_01_1015 + 8029884-8030676,8030755-8030771
          Length = 269

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 576 IVYCPSCLIILRIGCVAAGCLQHDGEDGHRARHFGGM 466
           +V CPS       GC   GC        HR RH GG+
Sbjct: 5   VVPCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGV 41


>11_06_0206 + 21201030-21201422
          Length = 130

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 516 LQHDGEDGHRARHFGGMQHGFEHKGREQLEGQGV 415
           L+   +DG + +H    + G  H+GR  + GQGV
Sbjct: 87  LRRRRDDGRQNKHGSNGRRGQGHRGRHHVRGQGV 120


>09_04_0441 +
           17626285-17626620,17626726-17626812,17627195-17627293,
           17627431-17627632,17627735-17627832,17628050-17628298
          Length = 356

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 528 AAGCLQHDGEDGHRARHFGGMQHGFEH 448
           AAGCL +  +D   A H+     G+EH
Sbjct: 316 AAGCLSYRSDDSAVASHYAASSWGYEH 342


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 321 SGEFLAVYNQPMCLGTGPGFTSRLSKHLCFGRSHRPKQLVDDLFDFPGLQQHAIL 157
           SG     Y++   + T     +  SKH C G + +PK++V+D+    G  Q A++
Sbjct: 203 SGGSALKYSRKKVVNTLTSVLTARSKHAC-GITEKPKEVVEDIDKLDGDNQLAVV 256


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
 Frame = -1

Query: 383 QSSGVQNKIHVPGANRIVTDV-QVNFWPYTTNPCVWAQVQ--------VLLRVSLNICAL 231
           QS    NK H      I++ V     W   +NPC W+ V          + R+SL  C L
Sbjct: 35  QSPARLNKAHEDIMRDILSSVGSTKNWNTCSNPCQWSGVHCSSVASSAFVTRLSLPGCGL 94

Query: 230 VDHTVLNSLLMIYSI 186
            + T+L S+  ++++
Sbjct: 95  SNATILASICNLHTL 109


>03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321
          Length = 90

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 LPKHRCLERREVKPGPVPKHMGWLYTAKNSPEHQLRCGWRP 349
           LPK+R L   E +   V +  GW++ A + PE  +    RP
Sbjct: 30  LPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70


>01_06_0285 +
           28183108-28183209,28183495-28183754,28183950-28184237,
           28184385-28184495,28184815-28184905,28185146-28185214,
           28185627-28185716,28185887-28185937,28186040-28186258,
           28186371-28186490
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 150 ILTKWHAAVNPENRINHQQAV*DGVIYQSTDV*RDAK*NLDLCPNTWVGCIRPKIHLNIS 329
           IL K + A   ++  ++  A  DG  +  TD+ R +K  L LCP+        KI L+++
Sbjct: 168 ILPKLYRAA--QHAYSNSAAAKDGS-FMETDLMRHSKALLILCPDMLTAWNSRKIVLSVN 224

Query: 330 YDAVGARD 353
           YD    +D
Sbjct: 225 YDFTKLKD 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,611
Number of Sequences: 37544
Number of extensions: 432516
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)