Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d21
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   1.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    27   2.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.7  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 391 EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGMFVEVN---GNWYEGHW 552
           +DV+FG++  G K   G  W ++N     YW++    GLG     N   GN+ EG++
Sbjct: 303 DDVFFGWF--GDKAISG--WSNNNFDAYSYWHESPNMGLGTVGMGNFTVGNYPEGYF 355


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -3

Query: 525 NFYKHSQSLSLVFIPIP-GVKGVVRIP----HFTVPMFLTTFPETEVNVFIAVITPT 370
           N Y H   +SL F P   G+     IP       VPM+ TTFP ++  +  A   P+
Sbjct: 285 NAYPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 391 EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGMFVEVN---GNWYEGHW 552
           +DV+FG++  G K   G  W ++N     YW++    GLG     N   GN+ EG++
Sbjct: 303 DDVFFGWF--GDKAISG--WSNNNFDAYSYWHESPNMGLGTVGMGNFTVGNYPEGYF 355


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 625 PSSPPVVVQCACDSICQNRSSNFFPS 548
           PS  P  V C  D+I ++ SSN  PS
Sbjct: 47  PSYAPYYVDCPSDNIVESLSSNEIPS 72


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 221 LLSLFLENYTKETGI--KVLGTVLVS*VISCLIIPINWSTVANGFAENQKVSVGV 379
           LLS+  E  +K   +   V  ++    +ISCL  P+ W T+A    +   V  GV
Sbjct: 367 LLSIMQERNSKAMYMYKPVTSSIRFLQIISCLSFPVGWRTLAKDLFKLLPVYTGV 421


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 444 FTVPMFLTTFPETEVNVFIAVITPTDTFW 358
           F  P++ +++PE  +N  + +  P+  FW
Sbjct: 13  FGKPVYFSSYPEVPLNCSLVIDGPSFAFW 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,272
Number of Sequences: 5004
Number of extensions: 73937
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)