Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d20
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006684-6|AAF39964.1|  361|Caenorhabditis elegans Hypothetical ...    29   3.1  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormo...    29   4.1  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
           protein ZC373.4 protein.
          Length = 1211

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 QKPDVDIAIQQDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSL 441
           QK + D+ + QD N+S +P K+  +KK +    +     +  +S+
Sbjct: 407 QKKNGDVPVTQDANMSTEPEKEEKKKKKKIANADGSTKTEKTSSV 451


>AC006684-6|AAF39964.1|  361|Caenorhabditis elegans Hypothetical
           protein T02H6.5 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/113 (23%), Positives = 50/113 (44%)
 Frame = +1

Query: 175 SVDFCNKFPAKSLRAGSILVHINCFKLSNLELMAEKENSVCIVFQKPDVDIAIQQDMNLS 354
           SVDF  +   K  + G   +  + +KL++L+   +  N    +F    VD+ I +   L 
Sbjct: 114 SVDFWIELFYKLDKRGPGKLRSSVYKLNHLKKRLKYLNRFDELFSIKHVDLVIDK-YKLF 172

Query: 355 LDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDFN 513
            D     + +K + +E   +    + N +N + N  K  NG+ +     +DF+
Sbjct: 173 GDSISHPLFQKCDYMEIVGNTSYISNNEMNFVLNNFKLKNGLLTNCLIAEDFD 225


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 352 SLDPRKQLMRKK--LEDVEFESDADDKNANSLNVINNTTK-FINGIESALTFEKDFNSLK 522
           SLD R  L + +   E +  E+D D    +SL+ ++NT +  + G+       K F +++
Sbjct: 507 SLDSRPLLSKHRDCFEKLATEADEDTNCQSSLSTLSNTVQMMLQGVHGEALLCKSFYTIR 566

Query: 523 KTY 531
            T+
Sbjct: 567 DTF 569


>AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 261 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 325 YQRQAFETQCIQNFPFLPSILDYSA*SNLYALGYCRRAGFSLGIYYKNQL-IQKVNIIMQ 149
           Y+  AF++ CI N  F  +    S    + A  +     F+L +YYKNQL +  + I ++
Sbjct: 246 YEFAAFKSFCIWNIKFHKT----SRIMRIVAQSHYMAVSFALRMYYKNQLKLSDMEIAIR 301

Query: 148 ENVLTLTL 125
              +TL +
Sbjct: 302 IGDITLQI 309


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +1

Query: 301 VFQKPDVDIAIQQDMNLSLDPRKQLMRKKLEDVE--FESDADDKNANSLNVINNTTKFIN 474
           ++ K +  + + Q+++  +   + L + KL+ +E   E+    K    LN     TK + 
Sbjct: 392 IYFKKNCKMPVFQEISFFVALCQILAQNKLQSLESHHENSQQFKIFRQLNFQGPATKTLG 451

Query: 475 GIESALTFEKDFNSLKKTYEKIMKSI 552
            ++  L ++++FN  K+ YE++ + +
Sbjct: 452 KLKF-LCYDEEFNPWKEAYEQLSRGV 476


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 417 CIAFKFHIFEFLSHQLLPWIQAKIHILLNSNINVRLLKHNAYRIFLFCHQF 265
           C    F  F F+   L P+I   I I +N N ++   +H   + ++F   F
Sbjct: 158 CFIISFVFFNFVISVLTPFIYIPIMIDINKNQHLHSQQHIYLQNYIFIQSF 208


>AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical
           protein Y11D7A.13 protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 334 QQDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFING 477
           QQ  NL L P     +  LED    +  + KNA+++N++ + T   +G
Sbjct: 225 QQTKNL-LPPSLLTPKSDLEDETLSTKTEQKNASTMNILLSMTNNCDG 271


>AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical
           protein C17A2.1 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 325 YQRQAFETQCIQNFPFLPSILDYSA*SNLYALGYCRRAGFSLGIYYKNQL-IQKVNIIMQ 149
           Y+  AF++ CI N  F  +    S    + A G+      +L +YYKNQL +  + I ++
Sbjct: 247 YEFAAFKSFCIWNIKFHKT----SQTMRIVAQGHYVAVSSALRVYYKNQLKLSDMEIAIR 302

Query: 148 ENVLTLTL 125
              +TL +
Sbjct: 303 IGDITLQI 310


>Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical
           protein C48D5.2a protein.
          Length = 1026

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   DLLTGTVALYFISVYSVCKSLWSCC 75
           D ++ T+ ++ I    +CK LW CC
Sbjct: 280 DGVSETIMIFNIMSAKICKLLWKCC 304


>Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical
           protein C48D5.2a protein.
          Length = 1026

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   DLLTGTVALYFISVYSVCKSLWSCC 75
           D ++ T+ ++ I    +CK LW CC
Sbjct: 280 DGVSETIMIFNIMSAKICKLLWKCC 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,789
Number of Sequences: 27780
Number of extensions: 246628
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)