Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d16
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 0.44
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 31 0.59
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.0
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 29 3.1
03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409 29 3.1
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 27 7.2
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 27 7.2
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 27 7.2
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 27 9.6
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 27 9.6
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 27 9.6
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 27 9.6
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 184 YKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRR 354
Y P WK R R K+NEG P S+D P W++LG V R
Sbjct: 593 YHRPSPWKVLGGVLHRTTRRGEKNNEGAPPLFSRDVHGNGHHRP-SPWKALGGVLHR 648
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +1
Query: 73 PEGSQPENDTLSKSN----DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQL 240
P GS P+ND S+ D+ K P SL+ P +K + NF + +
Sbjct: 688 PVGSAPKNDNKSRHGIQAADVSGVTSAKDPTSTKTSLDRLKQPMPYKGRKELMNFLHDAM 747
Query: 241 RSTKSNEGDRPSGSKDNFEEKEITPDQK 324
+S N P + DQK
Sbjct: 748 QSPDKNTSTAPVSQRKRVAAPLGNVDQK 775
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +1
Query: 82 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNE 261
S ++ + +S D K +K P DS +L K PK K+S ++ K+ +
Sbjct: 161 SWKDSKSSKESKDSKSSKESKEPKPSKDSKQL---KPPKVSKESKP--LKDSKEDKKAVK 215
Query: 262 GDRPSGSKDNFEEKEITPDQK 324
D+ + +KD+ E+K+ D K
Sbjct: 216 EDKKAAAKDSKEQKKALKDSK 236
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 208 KSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSP 387
+S S N+ +++ + P+G K N I+P SL V S A T K
Sbjct: 367 RSTSRTDVNKANPARASRNNIPTGGKSNRVSPSISPSSSVDSLSSVVSGASTASTVGKMS 426
Query: 388 KSPGENSSHSKRLA 429
+ S+ S L+
Sbjct: 427 HTSESFSTRSSSLS 440
>03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409
Length = 99
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 268 RPSGSKDNFEEKEITPDQKWQSLGK 342
+P+G+K F +E P+Q WQ+ G+
Sbjct: 35 KPAGNKKKFITREEEPEQYWQAAGE 59
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +1
Query: 118 DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFE 297
D+C K N+ A D++E+T K WKK ++ +N + ++ P G+
Sbjct: 144 DVCSKYSNQCGAIVRDNVEITF----KDWKK-VNPAKKNMCWTELKSKFSFPEGT----- 193
Query: 298 EKEITPDQKWQSLGKVFR 351
++E+ D +++GK++R
Sbjct: 194 DEEVAKDFALKTMGKLWR 211
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +1
Query: 73 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 252
P G P + + S+D + KP+K E + + K KK +N ++TK
Sbjct: 328 PSGPNPSIKSKASSSDQ-KPKPSKPTEEEREEKAAAAVAAEKPKKKKATNEIDKIFQATK 386
Query: 253 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKR 423
S+ R + EE K +S G ++ + A+ +K + ++ KR
Sbjct: 387 SSGKKRKQQQQQGEEESVRAKKPKERSEGA--KKSNKAKKGSKGRDTDDDDEVEEKR 441
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 310 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQ 468
+P K + K+F++ + + +PK G+ + LA K+++ + GKS+
Sbjct: 389 SPSFKTRQNQKLFQKSEYLRLVHDAPKYEGKLCKKACLLAYKEILKNEIGKSK 441
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 97 DTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPS 276
D+LSK+N K+P+ + T + K KS R+ R G +
Sbjct: 363 DSLSKTNGFLSKRPSFQMRSSVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGSGMN 422
Query: 277 GSKDNFEEKE 306
S D+ E+KE
Sbjct: 423 VSTDSSEDKE 432
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 308 SLLTKSGNLWGKYFVVKALPKRGTSL 385
S L K G +WG Y V + KRG +
Sbjct: 301 SWLCKEGRMWGAYMVFAEMFKRGVEV 326
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = +1
Query: 220 NFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD------QKWQSLGKVFRRQSFAETWNK 381
N+F+ + N SG ++ EEK + Q +Q+ G F+ QS N
Sbjct: 357 NYFQGEASQNDGNSIKEQSGYGNSCEEKTFQSNRNYFQGQAFQNDGNSFKEQSVQNNGNS 416
Query: 382 SPKSPGENSSHSKRLAVKKVISSYF 456
+ EN+ +S + + + YF
Sbjct: 417 IEEQICENNGNSCEVQIFQNNKDYF 441
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 154 EGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKD 288
EG D L L++Y++ W+KS+ S + + G D
Sbjct: 169 EGYDKLRLSAYQSLSAWRKSVDGAVGGLTASVDATKKQAAGGVTD 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,917,508
Number of Sequences: 37544
Number of extensions: 251923
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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