Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d15
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.9  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    27   3.9  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.9  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   3.9  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   3.9  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.1  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   6.7  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 479 KVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVT---KD 649
           K +  L+QV  +     I  EE KP++ S V W E +K     +  E I  S+ +     
Sbjct: 361 KKARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTH 420

Query: 650 YCGIFDSVGM 679
            C ++  VG+
Sbjct: 421 LCQVYKEVGL 430


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 269 DDYLTKENKQFLEEVIKDKLEAQTALEKK---ALTSPILN 379
           DD + K  +QF ++ ++D LE +  L  K   +L SP L+
Sbjct: 119 DDTMEKRLEQFSDDTLQDTLETEKNLNSKTSESLKSPTLS 158


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 IPPEEYKPMIKSNVKWVEKQKY 595
           I PE +K +I+ N+ W + + Y
Sbjct: 418 IDPESHKALIEKNISWADDEYY 439


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 411 KQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLS 524
           K+++W+    + E I++G++ V   P +   L++ + S
Sbjct: 254 KKQDWEAALAKIEEIYFGIRPVSNQPNILANLMSSLFS 291


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 669 LSNIPQ*SLVTTLGSMFSAPTNIQPYF 589
           + N PQ S    L + FS P N QP F
Sbjct: 316 IQNQPQQSAFQNLNTQFSLPNNSQPVF 342


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 108 KIVKTLCSQIV*NYYGVLYKNRGLIMRRVIFVVHRGSLDFVHRIGMSQKRECGQ 269
           KI ++  S  +  YYG  Y N    +   +     GSLD +++   SQ    G+
Sbjct: 127 KINRSCTSPYIVKYYGACYNNAECQLNIAMEYCGAGSLDAIYKRVRSQGGRTGE 180


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 494 LLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 595
           LL+V+ N V  Y+PP   K  +  +   V  +KY
Sbjct: 266 LLKVIKNPVTDYLPPNCRKATLSFDAPTVPPRKY 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,033
Number of Sequences: 5004
Number of extensions: 69270
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)