Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d15
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0074 - 615794-615883,616186-616391,616524-616614 30 1.7
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184... 30 2.3
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 29 5.3
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760... 28 7.1
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 7.1
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 9.3
03_06_0199 + 32310272-32311432 28 9.3
01_06_1781 + 39832977-39833284,39835083-39835261,39836085-398361... 28 9.3
>12_01_0074 - 615794-615883,616186-616391,616524-616614
Length = 128
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 329 EAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCK 469
E + +E +AL + I K+ W T + + ++IG+Y W K
Sbjct: 63 ERRIEIEARALLATIARYKKQTDQWLAATNAINSVLKEIGDYENWMK 109
>09_06_0011 +
20217882-20217989,20218085-20218272,20218355-20218421,
20218464-20218538,20219100-20219152,20219661-20219715,
20219812-20219886,20220495-20220612,20220720-20220766,
20220853-20220954
Length = 295
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 212 RQPRFRPPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKK 391
R PRF P Y V KE + + N F +E+ +K + Q ++ KK+ + ++K
Sbjct: 149 RDPRFEPVYGPVDKE-----GFRKRYNFLFDDELPAEKEKLQKSI-KKSKDPNAIEEMKS 202
Query: 392 NVTWTPQTKR 421
+TW + R
Sbjct: 203 RITWIDKQLR 212
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +2
Query: 278 LTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYP 457
L +EN + L ++++ + Q ALE+K L + +K T + Q K L G Y
Sbjct: 247 LAQENSKLLPKIVESPEKLQRALEEKKTARAELKNAEKIATQSVQEKTATLEIYSKG-YE 305
Query: 458 LWCKDGKKVSTTLLQV 505
K K+ QV
Sbjct: 306 KLSKHSTKIQALQEQV 321
>04_04_0929 -
29474540-29475247,29475485-29475850,29476032-29476093,
29476191-29476302,29476401-29476529,29476724-29476738
Length = 463
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 179 DNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLE 307
D++ ++ +R P+ R PY + WT+D E+K FLE
Sbjct: 34 DSSGMDMMDEARIPKARKPYTITKQREKWTED----EHKLFLE 72
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/56 (21%), Positives = 30/56 (53%)
Frame = +2
Query: 230 PPYWYVPKERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNV 397
PP +Y+P + + D + +ENK+ + K + A+ +K + +++V++ +
Sbjct: 301 PPIYYMPAKPIIDDPAIAEENKEKAFQEWKSERRAELTQFQKQVEEQYMSNVERQL 356
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +2
Query: 416 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 595
+ + + RK N C D S DN V+++ E +K IK + K Q Y
Sbjct: 14 RNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAKIKCHFKMQIIQSY 73
Query: 596 GCILVGA 616
+ A
Sbjct: 74 QNFMTSA 80
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 200 RGAS-RQPRFRPPYWYVPKERVWTD 271
RGAS R PRFRP +W + E TD
Sbjct: 18 RGASARDPRFRPRHWAMLDEVFQTD 42
>01_06_1781 +
39832977-39833284,39835083-39835261,39836085-39836170,
39836205-39836293,39837477-39837579,39837940-39837968,
39838668-39838830,39838901-39838954,39839443-39839621,
39839869-39840001
Length = 440
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 602 ILVGAENIDPSVVTK--DYCGIFDSVGMLPKKAPLQICCITRICFTKWHSIIC 754
+L ENID T+ CG+ + + L+ C ITR T W +C
Sbjct: 74 MLRNLENIDADRATQIPSKCGVPGASSSCKLRGSLERCAITRNLVTNWLGPLC 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,672,191
Number of Sequences: 37544
Number of extensions: 403725
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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