Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d14
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.24
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 29 0.56
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 3.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 4.0
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 5.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 6.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 6.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 6.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.1
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.1
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 25 9.1
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 9.1
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 25 9.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.1
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.24
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Frame = +1
Query: 184 DVEVIIRAQKNMLQRFEKTTEMLTNC--NQLSA-----SRLRAASTEFKKHTQLLFEMRK 342
++ V+ + KN FE + + L N +Q+S R+ A TE + E +K
Sbjct: 320 EINVLSQQSKNFNGVFESSYQPLINDLDHQISVMQNDEKRINNAKTELSLSLEKKLEAKK 379
Query: 343 DLEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKPESKMVATVS 522
E ++K L + E K AN+ LVD DL+ ++ S
Sbjct: 380 QKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYLSKELAS 439
Query: 523 TE 528
TE
Sbjct: 440 TE 441
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 29.1 bits (62), Expect = 0.56
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 364 KIRAIKTKL-SSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKPESKMVATVST 525
K R + T L SS +P+ +EA A+ L R + DED+ EK K++ ST
Sbjct: 481 KSRFVFTMLPSSTFPQRLQEAEAKKLQERTSKLTDEDI-AEIEKTSVKLLEAQST 534
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 130 SSGSILSRNHFLEYRSPLFIVFVHNTLYL 44
SSG I+ NH +YR ++ VH YL
Sbjct: 343 SSGCIIEDNHVFKYRHLPYLASVHPFSYL 371
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 444 ICKRLCNRFFVCFWVLRTELGF 379
+CK LCN F W + E+ F
Sbjct: 1332 LCKALCNTIFPILWRPKEEINF 1353
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 166 GMVD-QTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLS 273
G +D TD+ + R +L+ FE T +TN N+LS
Sbjct: 70 GPIDPNTDINQVPREPYRLLKEFEWATIDVTNDNELS 106
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 322 LLFEMRKDLEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDL 474
+++ ++ D + KK+R ++ P E V E N+K ++D +L
Sbjct: 885 VVYSVQADWPVLGKKLRKDMARVKKALPNVTSEEVKEFQKNKKMVLDGIEL 935
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +1
Query: 313 HTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEK 492
H + L E++K +E I A +L+ YP+ + V+ NRKP D+ ++
Sbjct: 345 HDEKLNELKKQVE-----ISASAAQLNGLYPQKKRAFVSHFSQNRKP-YSQSDISKAQSS 398
Query: 493 PESKMVATVSTE 528
S+ + + E
Sbjct: 399 SFSEEPSNIYDE 410
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -1
Query: 112 SRNHFLEYRSPLFIVFVHNTLYL----YTNFLIFWS 17
SR+ +L Y S L FV+ L YT FLIFW+
Sbjct: 333 SRDRYLVYNS-LIKSFVNTVLKTFRCRYTQFLIFWA 367
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 391 SSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKP 495
SS YP + + SL ++KP V +D+K P
Sbjct: 48 SSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLP 82
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 150 KNFGRSVVLEA-FYREITFWSTVRHYLLFSYTIHY 49
K F + + EA FY +I F S+ H + SY+ HY
Sbjct: 278 KEFATAKIPEASFYGKIIFSSSGPHIQVASYSGHY 312
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +1
Query: 229 FEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPE 408
F ++L + S+ R+ + L R LE + ++ + +
Sbjct: 247 FNLGPDILEDEPSYSSRASRSRQSSLSSRLSELPSKRASLEILRRENTFPADPIQEFGEK 306
Query: 409 AYKEA-VAESLANRKPLVDDEDLKPSEEKPESKMV 510
AY E + E ++N +PL+DD L+ + E S +V
Sbjct: 307 AYNERELMEEISNFEPLLDDNLLENANEAVNSPVV 341
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 106 FSIECFQNYTAPEVFVQGLAGMVDQTDVEVIIRA 207
+ +E FQ+ + P V LAG + D+ V I A
Sbjct: 52 YGLEVFQDSSKPNEVVLSLAGKIILIDITVPINA 85
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 307 KKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPEAYK-EAVAESLANRKPLVDDEDLK 477
K+HT+ + + KDLE K + +L + E ++V+ N++ V++E K
Sbjct: 879 KEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFK 936
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 211 KNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEM 336
K L + TT N + + SR+ +S +F HT+ +EM
Sbjct: 213 KESLSKKNNTTNS-RNLRKTNVSRIEYSSNKFLNHTRKRYEM 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,955
Number of Sequences: 5004
Number of extensions: 49975
Number of successful extensions: 165
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -