Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d14
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325     63   2e-10
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    31   1.0  
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    29   3.1  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    29   4.1  
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     28   7.1  

>03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325
          Length = 123

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/95 (30%), Positives = 55/95 (57%)
 Frame = +1

Query: 169 MVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDL 348
           +VD  D+  I + Q  +L R + +  +LT+ N+ S       S +F   T+LL  M+ DL
Sbjct: 22  LVDTGDIGAIRQTQHLILGRLQDSNAVLTHFNEYSEQCFAEVSNDFASKTRLLKSMKDDL 81

Query: 349 EFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKP 453
           + IF K+R++K++L++ YP+A+ +       +++P
Sbjct: 82  DHIFLKLRSMKSRLAATYPDAFPDGAMAKTMDQRP 116


>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +1

Query: 283 LRAASTEFKKHTQLLFEMRKDLEFIFKKIRAIKTKLSSQYPEAYKEAVAESL 438
           L++ +   ++++ L+  M  D+E +  K  + K   S  YPE+  +A+ + +
Sbjct: 96  LKSKANNLEENSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEV 147


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 373 AIKTKLSSQYPEAYKEAVAESLANRK--PLVDDEDLKPSEEKPESKMVATVSTETL 534
           AIK K    +P+A K A A + A  K  P  D +  +PS  KP    + + S+  L
Sbjct: 27  AIKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPSTRKPNPTKLRSPSSSNL 82


>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
            27263776-27263860,27263970-27264074,27264446-27264527,
            27264573-27264686,27265029-27265330,27265519-27266114,
            27266216-27266376,27266489-27266592,27266697-27266856,
            27266942-27267105,27267213-27267545,27267640-27267930,
            27268276-27268359,27268430-27268563,27268665-27268892,
            27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 301  LWMQPLIYWPTADYNLSAFLLFFQISATYSFV 206
            LW Q   YW  +++N+  F+  F +S  +  V
Sbjct: 1054 LWKQNCAYWKNSEHNVVRFINTFAVSIMFGIV 1085


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 27/124 (21%), Positives = 55/124 (44%)
 Frame = +1

Query: 151 VQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLF 330
           ++ L G V+  D+  ++R  +++  R E          +LSA   R  +   +  T L  
Sbjct: 82  LRALRGRVN-ADIIAVLRRARDIRARLEAMDRANAAQRRLSAG-CREGTPLDRTRTALTA 139

Query: 331 EMRKDLEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKPESKMV 510
            +RK L+ +    +A++ ++ S+Y +   E    +L    P  +  +   SE + E  + 
Sbjct: 140 ALRKKLKDLMLDFQALRQRIMSEYKDTV-ERRYYTLTGEVPEEEVIERIISEGRSEELLC 198

Query: 511 ATVS 522
           A V+
Sbjct: 199 AAVA 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,652
Number of Sequences: 37544
Number of extensions: 279103
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)