Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d12
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200... 111 6e-25
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 109 1e-24
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 31 0.76
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308... 31 0.76
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 29 2.3
03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224... 27 9.4
01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482... 27 9.4
>10_08_0301 -
16619499-16619675,16619770-16619853,16619932-16620083,
16620296-16620391,16620473-16620627,16620791-16620856,
16620993-16621062,16621175-16621305,16622121-16622307,
16622410-16622485
Length = 397
Score = 111 bits (266), Expect = 6e-25
Identities = 45/99 (45%), Positives = 67/99 (67%)
Frame = +1
Query: 337 PFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVAN 516
P+F+ G V+KGFGRGSK LG PTAN P E + GVY+GWA + T +++MV +
Sbjct: 238 PWFIGGPVIKGFGRGSKVLGIPTANLPAENFSDVLSEHTSGVYFGWAGLSTRGIFKMVMS 297
Query: 517 IGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYL 633
IGW P++ N E ++E ++H+F DFYG L++ ++GY+
Sbjct: 298 IGWNPYFDNTEKTIEPWLLHDFGEDFYGEELRLVIVGYI 336
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 109 bits (263), Expect = 1e-24
Identities = 45/99 (45%), Positives = 66/99 (66%)
Frame = +1
Query: 337 PFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVAN 516
P+F+ G V+KGFGRGSK LG PTAN P E + VY+GWA + T +Y+MV +
Sbjct: 170 PWFIGGSVIKGFGRGSKVLGIPTANLPAENFSDVLSEHTSRVYFGWAGLSTRGIYKMVMS 229
Query: 517 IGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYL 633
IGW P++ N E ++E ++H+F DFYG L++ ++GY+
Sbjct: 230 IGWNPYFDNTEKTIEPWLLHDFGEDFYGEELRLVIVGYI 268
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 514 NIGWCPFYQNKEMSVETHIMHNFQG---DFYGSNLKIALIGY 630
+IG F + KE+ V++H+ + + D Y SN +I+L+G+
Sbjct: 339 DIGAPSFQETKELQVDSHVAEDSEAEDDDLYLSNCRISLVGF 380
>01_06_0768 -
31829753-31829851,31830454-31830593,31830729-31830818,
31830905-31831059,31831598-31831663,31831862-31831931,
31832299-31832429,31832516-31832702,31832828-31832894
Length = 334
Score = 31.1 bits (67), Expect = 0.76
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 457 GVYYGWAQVDTGPVYEMVANIGW 525
G+++GWA+ + G V V +IGW
Sbjct: 269 GIFFGWAKPEAGGVSRSVISIGW 291
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 327 ISSAFFP*RRGSQGFW-KRF*GTRMPNS*LSFGSCKI--FTKRFGARCLLWMGS 479
I P + ++G W +F T++P L F S RFG CL+W+ S
Sbjct: 778 IKHFMLPAAQEAEGIWMNKFGFTKIPQEQLDFWSVSWVGIIARFGRACLMWLSS 831
>03_06_0463 +
34121421-34121560,34121728-34121812,34122129-34122428,
34123194-34123352,34123852-34123992,34124078-34124134,
34124534-34124672,34124954-34125058,34125159-34125376,
34125980-34126021,34126136-34126309
Length = 519
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 514 NIGWCPFYQNKEMSVETHIMHNF 582
N +CPF + KE VE H+ H++
Sbjct: 452 NKDFCPFEEFKEKIVEPHLKHDY 474
>01_01_0638 -
4819365-4819685,4819702-4819882,4820018-4820073,
4820107-4820148,4820484-4820639,4820681-4820809,
4821072-4821254,4821374-4821524,4821670-4821848
Length = 465
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 373 GRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMV--ANIGWCPFY--- 537
G G ++ G L V LP G E G++YG +D G V ++G +
Sbjct: 36 GAGLEKEGGSRVKMLLSYVDKLPTGREDGLFYG---LDLGGTNFRVLKVHLGGSKKHVVN 92
Query: 538 -QNKEMSVETHIMHNFQGDFYG 600
+++E+S+ H+M + +G
Sbjct: 93 SESREVSIPPHLMSGTSSELFG 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,207
Number of Sequences: 37544
Number of extensions: 298123
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -