Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d11
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.5  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   6.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   6.0  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   7.9  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   7.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   7.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   7.9  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.9  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 242 AQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHVNRHRRRVMHDDNYVHTVLNLAP 421
           AQ    TN + V  HE    H         H +N DH++++  +  H+   +  + N   
Sbjct: 516 AQKMGYTNDDHVSQHEH--THENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHH 573

Query: 422 VMNHYLDQN 448
             +H+ + N
Sbjct: 574 CHHHHENHN 582


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/104 (22%), Positives = 46/104 (44%)
 Frame = +2

Query: 152 HIVDSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREV 331
           ++ + + PNK E K + L+N    L + T      + + + V +  +        WPR  
Sbjct: 10  NMAELLHPNKVEMKPF-LKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVK 68

Query: 332 HIYNEDHVNRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIEL 463
           H+Y +   N  +  +++ D  +     L+     ++ +NN IEL
Sbjct: 69  HVYQQ---NNEKLVLLNRDASLDGTRGLSDATVSFIKENN-IEL 108


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +2

Query: 356 NRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNN--AIELYQAYFC----DMESQKPVEKYD 517
           +R   R  HDD Y     + +P      ++N   A E  ++Y       MES  P E YD
Sbjct: 276 SRDDGRPSHDDEYRRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTESYD 335

Query: 518 VKIANVFRDP 547
              A+  + P
Sbjct: 336 KPAASEEQQP 345


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 503 VEKYDVKIANVFRDPSSRPISCIQWTNEKK 592
           +E + + IAN F+   S   S + W NE++
Sbjct: 20  IEDFSLAIANRFKQMGSHSDSEVDWDNEEE 49


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 338 YNEDHVNRHRRRVMHDDNYVHTVLNL 415
           Y  +H+N + RRV  D  Y+ T+L L
Sbjct: 452 YVSNHLNFNVRRVKSDTVYIPTILQL 477


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 140 KVPAHIVDSIIPNKDEQK 193
           K+P H +D+++P KD+ +
Sbjct: 231 KIPQHFMDTLVPVKDDDE 248


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 403 SMYVVIVVHNATAMPIYVVFVVNVHLTGPSTFSVVNALFVNYH 275
           S+ +V+     T    ++   + +HL  P  F+++  LF NYH
Sbjct: 691 SLAIVLPQVGYTQGMSWIAGALLMHLPAPQAFALLVFLFKNYH 733


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 506 EKYDVKIANVFRDPSSRPISCIQWTNEKKPKLVVAYSN 619
           EKY+  IA   R      +  ++W    +PK V ++++
Sbjct: 96  EKYNTDIAEDLRQKIRAEVDGVEWVKVDRPKSVSSHAS 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,104
Number of Sequences: 5004
Number of extensions: 65838
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)