Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d11
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90...    30   2.0  
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380...    29   3.5  
04_04_0505 + 25719959-25720052,25721548-25722266                       29   3.5  
04_03_0536 - 16875813-16876087,16877023-16877091,16877134-168772...    29   3.5  
11_01_0706 + 5811722-5814025                                           29   4.7  

>10_01_0070 +
           902999-903354,904354-904600,904718-904897,905087-905332
          Length = 342

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 566 CIQWTNEKKPKLVVAYSNPRTTHENNSCFFWDL---NRQTIPA 685
           C++W +E+   ++V   N R   EN   F W+L   +RQ I A
Sbjct: 263 CLRWLHEQGDCIIVKSFNERRMRENLEIFDWELTDADRQEISA 305


>10_08_0254 +
           16236689-16236793,16237760-16237808,16237988-16238076,
           16238178-16238234,16238684-16238746,16238828-16238893,
           16239520-16239606,16239691-16239784,16240351-16240673,
           16241022-16241048,16241065-16241145,16241445-16241476,
           16242126-16242266,16242455-16242516,16243170-16243387
          Length = 497

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 419 PVMNHYLDQNNAIELYQAY-FCDMESQKPVEKYDVKIANVFRDPSSRPISCIQWTNEKK 592
           PV+N Y+ ++    L+Q Y F +  S++  + Y +KI N+ +    +PI   + + +KK
Sbjct: 50  PVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD-YAIKILNMIK-LYGKPIRVNKASQDKK 106


>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 545 DHGKHSLFLHRISRQAFATP 486
           DHG+  L LH   R+AFATP
Sbjct: 62  DHGRKPLTLHEGRREAFATP 81


>04_03_0536 -
           16875813-16876087,16877023-16877091,16877134-16877292,
           16877307-16877636,16878764-16879030,16880033-16880077,
           16880159-16880261
          Length = 415

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +2

Query: 137 QKVPAHIV--DSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENETNTEPV 277
           +++P H+   +S++ N+D+  + +L+NP +++ + T     N+T  E V
Sbjct: 155 ERLPVHLPLGNSVVYNEDDSLEQVLQNPWNQITKLTAWFEANKTYPEAV 203


>11_01_0706 + 5811722-5814025
          Length = 767

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
 Frame = +2

Query: 434 YLDQNNAIELYQAYFCDMESQKPVEKYDVKIANVFRD-PSSRPISCIQWTNEKKP----- 595
           +LD  N   +Y A    +   + +E  D+ + N+    PS   ++ +++T    P     
Sbjct: 111 HLDLGNMQHMYSADISWITHLRSLEYLDMSLVNLLNTIPSLEVLNLVKFTLPSTPQALAQ 170

Query: 596 ----KLV-VAYSNPRTTHENNSCFFWDL 664
               KLV +  S+ R  H   SC+FW+L
Sbjct: 171 LNLTKLVQLDLSSNRLGHPIQSCWFWNL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,902
Number of Sequences: 37544
Number of extensions: 392095
Number of successful extensions: 1032
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)