Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d11
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 31 0.60
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 31 0.60
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 31 0.60
AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical ... 31 1.0
Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical pr... 29 3.2
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 3.2
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 28 7.4
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 31.5 bits (68), Expect = 0.60
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Frame = +2
Query: 224 LVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHVNRHRRRV---MHDDNY 394
L+ + N V +HE I+++ + E HV R R+R M+ N
Sbjct: 376 LIDKKTIHNGNHHTIHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNA 435
Query: 395 VHTVLNLAPVMNH--YLDQNNAIEL----YQAYFCDMESQKPVEKYDVKIANVFRDPSSR 556
+ T L P +H D N++EL + +FC+ ++ + + D I PS
Sbjct: 436 LDTFFALNPRPDHDKMTDIANSLELDRDVVRVWFCN--RRQKMRRVDEPIEGEMVTPSVS 493
Query: 557 PI 562
P+
Sbjct: 494 PV 495
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 31.5 bits (68), Expect = 0.60
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Frame = +2
Query: 224 LVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHVNRHRRRV---MHDDNY 394
L+ + N V +HE I+++ + E HV R R+R M+ N
Sbjct: 374 LIDKKTIHNGNHHTIHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNA 433
Query: 395 VHTVLNLAPVMNH--YLDQNNAIEL----YQAYFCDMESQKPVEKYDVKIANVFRDPSSR 556
+ T L P +H D N++EL + +FC+ ++ + + D I PS
Sbjct: 434 LDTFFALNPRPDHDKMTDIANSLELDRDVVRVWFCN--RRQKMRRVDEPIEGEMVTPSVS 491
Query: 557 PI 562
P+
Sbjct: 492 PV 493
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 31.5 bits (68), Expect = 0.60
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Frame = +2
Query: 224 LVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHVNRHRRRV---MHDDNY 394
L+ + N V +HE I+++ + E HV R R+R M+ N
Sbjct: 376 LIDKKTIHNGNHHTIHHVDIHETSISNSISSVTASSLLSREQHVKRRRKRTNLDMNQRNA 435
Query: 395 VHTVLNLAPVMNH--YLDQNNAIEL----YQAYFCDMESQKPVEKYDVKIANVFRDPSSR 556
+ T L P +H D N++EL + +FC+ ++ + + D I PS
Sbjct: 436 LDTFFALNPRPDHDKMTDIANSLELDRDVVRVWFCN--RRQKMRRVDEPIEGEMVTPSVS 493
Query: 557 PI 562
P+
Sbjct: 494 PV 495
>AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical
protein Y6E2A.6 protein.
Length = 357
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -3
Query: 364 MPIYVVFVVNVHLTGPSTFSVVNALFVNYHGLSV 263
+P++ VF+ ++L G + F ++ +F+N+ L +
Sbjct: 250 LPLFAVFIPCIYLNGSAAFHYLDMIFINFSNLFI 283
>Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical
protein C25G4.4 protein.
Length = 424
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 113 NFGRQTLFQKVPAHIVDSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENETNTEPVVVH 286
NF Q V H D II + KQ ++ NPV + + ++ PVVVH
Sbjct: 285 NFWSQMQQTGVIGHFCDDIIVSAINLKQSVMDNPVTPTTANMLTRTAFALGIPPVVVH 342
>Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical
protein T14G8.2 protein.
Length = 347
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 521 KIANVFRDPSSRPISCIQWTNEKKPKLVVAYSN 619
K+A V DP + I W N P+L+ A SN
Sbjct: 311 KVATVHVDPEKSTFTLIGWENIISPRLMTALSN 343
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 398 HTVLNLAPVMNHYLDQNNAIELYQAYFCDMESQKPVEKYDVKIANVFRD 544
HTVL +P MNH+ Q N + + ++S P + + KI + +D
Sbjct: 1305 HTVLMTSPPMNHHESQANVLRVAPKQTI-VKSADPKPEDEAKILKILKD 1352
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 331 HLTGPSTFSVVNALFVNYHGLSVRF 257
HLT PS SVV+ L Y+ L+V +
Sbjct: 186 HLTKPSLISVVHGLGTKYYSLNVAY 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,637
Number of Sequences: 27780
Number of extensions: 381612
Number of successful extensions: 1169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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