Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28d10
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.57 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.57 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 545  LSPFQLTFFTYDIIFVTVFND*SLYLFFTYYIIFNMN 655
            L P +     Y +I+       S+YL    Y +FNMN
Sbjct: 994  LHPQEFNCLKYGVIYYVTVP--SMYLLLVIYSVFNMN 1028


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 545  LSPFQLTFFTYDIIFVTVFND*SLYLFFTYYIIFNMN 655
            L P +     Y +I+       S+YL    Y +FNMN
Sbjct: 994  LHPQEFNCLKYGVIYYVTVP--SMYLLLVIYSVFNMN 1028


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 392 FTVGRFFKMSP 360
           FT+G+FF ++P
Sbjct: 10  FTIGKFFALTP 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,668
Number of Sequences: 336
Number of extensions: 3158
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)