Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d08
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 93 1e-19
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 93 1e-19
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 33 0.20
Z19158-5|CAJ76965.1| 237|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 28 5.6
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 28 5.6
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 28 5.6
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 27 9.8
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 27 9.8
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/114 (37%), Positives = 67/114 (58%)
Frame = +2
Query: 359 ELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 538
ELC R+S AK+ +S+K+ Q +K + G+LH +LL A + +EL +
Sbjct: 189 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 248
Query: 539 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTS 700
APGGEFR A+ C++ LGDRPIQ+T+ RA SLS+++ + +H++ S
Sbjct: 249 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFS 302
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 297 ATVVLLGTVHFSKQSIEDVSENFVA 371
+T+ L+GT HFSK+S EDVS A
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRA 180
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/114 (37%), Positives = 67/114 (58%)
Frame = +2
Query: 359 ELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 538
ELC R+S AK+ +S+K+ Q +K + G+LH +LL A + +EL +
Sbjct: 187 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 246
Query: 539 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTS 700
APGGEFR A+ C++ LGDRPIQ+T+ RA SLS+++ + +H++ S
Sbjct: 247 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFS 300
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 297 ATVVLLGTVHFSKQSIEDVSENFVA 371
+T+ L+GT HFSK+S EDVS A
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRA 178
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/95 (27%), Positives = 49/95 (51%)
Frame = +1
Query: 172 ALSQQNQILYKHIIVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKM 351
+L Q +L++ I + FYYE + SI+ N+ HF +I+KP ++ +S+N ++
Sbjct: 21 SLCQFESLLFE-ISNRVFYYEHYLSVASIFINIFHFLILIHKP-----LRSSSIN-IIMA 73
Query: 352 FQRTLSPKSIIIGTRRKEVFGRCKKF*FQKAKTSR 456
F S+ + K+V+GR ++ F S+
Sbjct: 74 FIAIFDICSMFY--KMKQVYGRSIEYIFDPCLQSK 106
>Z19158-5|CAJ76965.1| 237|Caenorhabditis elegans Hypothetical
protein T23G5.2b protein.
Length = 237
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 20 IYKSVFDTT*NKFSSILQICDEIPVFINSEIKYE 121
IYK F+ + C +IP+F+ SE+ YE
Sbjct: 11 IYKHPFEIVMAAYEMRFPTCPQIPIFVGSEVTYE 44
>Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical
protein T23G5.2a protein.
Length = 719
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 20 IYKSVFDTT*NKFSSILQICDEIPVFINSEIKYE 121
IYK F+ + C +IP+F+ SE+ YE
Sbjct: 11 IYKHPFEIVMAAYEMRFPTCPQIPIFVGSEVTYE 44
>U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical
protein C15B12.2 protein.
Length = 269
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 266 FW*MLGYITFLS**NLLTIICLYSIWFCCDNAFNILK*QLSSYYTYWAFHILFHY 102
FW +L +IT+L LL I CLY + C N+F S+ Y F + FHY
Sbjct: 62 FWYILTFITYLVWTLLLWIPCLYH-YTCRHNSFYHRHKLCRSFIRY--FSVTFHY 113
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 253 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 393
+I +L+ F IN P S F+V + LL+ FQ++ K ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 238 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 399
K +YP I+ H K+ N + FW +V+ KMF + KS II R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 238 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 399
K +YP I+ H K+ N + FW +V+ KMF + KS II R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 253 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 393
+I +L+ F IN P S F+V + LL+ FQ++ K ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 350 IFNRLFTEVHCTQKNDRGLFIILQKCSRFW 261
+++ + T VHC +RG +I L K + FW
Sbjct: 312 MYDLVATVVHCGATPNRGHYITLVKSNSFW 341
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 350 IFNRLFTEVHCTQKNDRGLFIILQKCSRFW 261
+++ + T VHC +RG +I L K + FW
Sbjct: 324 MYDLVATVVHCGATPNRGHYITLVKSNSFW 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,857
Number of Sequences: 27780
Number of extensions: 351817
Number of successful extensions: 885
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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