Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28d07
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 28 1.5
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 27 2.6
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 3.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 4.5
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 4.5
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 26 4.5
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 23 5.7
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 5.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 7.8
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Frame = +2
Query: 185 KYGTKTPLARGPYGSWCTPETSPIHHPLTQTNSNIETKTQLQDQKRFLEANST----VFP 352
K+ + PL P + + TS I HP +N T L + L + + + P
Sbjct: 175 KHESDLPLGLSPADTNISNATSIIEHP---DAANAHTLASLNQPPKHLTVSPSSIQRLSP 231
Query: 353 LQKVRLFSTSPPPDYISSIEDKKAITELKELKKNYITKTTSGDKPPPIQEEPD 511
VR S P + SS+ K +ELK+ T + P + PD
Sbjct: 232 QPYVRPTSDERPIETDSSVSAPKVANHDEELKQGKSTSPSDTVLHPDLNGSPD 284
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 341 TVF-PLQKVRLFSTSPPPDYISSIEDKKAITEL 436
T+F PL+++ PPPD+ + K+ IT+L
Sbjct: 172 TIFAPLKELTRVFRHPPPDFAGKVSFKEHITQL 204
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +2
Query: 410 EDKKAITELKELKKNYITKTTSGDKPPPIQEE-PDCEPEYPQSPIPASPTRYTK 568
E +K +T E+ + K P +EE P EPE P T TK
Sbjct: 368 EAEKPVTSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKETTGTK 421
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/78 (19%), Positives = 29/78 (37%)
Frame = +2
Query: 74 SALYRAGSFXNTTKMVFDGLKLMKGHTVHPSTSDRDAKYGTKTPLARGPYGSWCTPETSP 253
+A Y+A +V++ L K + ++ ++ G+W P T P
Sbjct: 1637 AARYKASYRYTHDALVYNNLVRAKDSPPYTKEQEKAVYLNPLARASKSKAGTWTFPATLP 1696
Query: 254 IHHPLTQTNSNIETKTQL 307
+++TN T L
Sbjct: 1697 AESDISKTNETTRTLQSL 1714
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 437 KELKKNYITKTTSGDKPP----PIQEEPDCEPEYPQSPIPASPTRYTKCKGFLLSTFCDP 604
K++ + +++ T DK P P++ EP + + P +P P S + +G L+T
Sbjct: 97 KKISRPVVSEDTFKDKLPRATIPVKPEPQPQYKIPAAPAPTS--KRVVNRGLKLNTNLRQ 154
Query: 605 YMPIDPQGRL 634
PI P L
Sbjct: 155 ASPILPSPSL 164
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Frame = +2
Query: 146 GHTVH-----PSTSDRDAKYGTKTPLARGPYGSW 232
GH +H P + D+ KY + GP GSW
Sbjct: 426 GHRIHAWIVKPESFDKSKKYPVAVLIHGGPQGSW 459
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 602 PYMPIDPQGRLYIGWLCLVTFCYSY 676
PY+ GR W CLV C++Y
Sbjct: 230 PYLVEGSTGRFLGFWACLVQSCFAY 254
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 23.4 bits (48), Expect(2) = 5.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 296 KTQLQDQKRFLEANSTVFPL--QKVRL-FSTSPPPDYISSIEDKKAITELKELKKNYITK 466
K + Q+ K+F N+ VFP + RL S + P S+ + ++ +K+ + N+I
Sbjct: 489 KKENQEIKKFTNQNNMVFPTSDRDTRLQNSLAQQPIGHSTPHNSPSLLSVKKRQNNHIRS 548
Query: 467 TT 472
T
Sbjct: 549 NT 550
Score = 20.6 bits (41), Expect(2) = 5.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 467 TTSGDKPPPIQEEPDCEPEYPQSP 538
T GDK + + +PE P SP
Sbjct: 570 TVPGDKIDTVWKSSVTKPETPTSP 593
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Frame = +2
Query: 278 NSNIETKTQLQDQKRFLEANSTVFPLQKVRLFSTSPPPDYISSIEDKKAITELKELKKNY 457
NSNI+ K Q + NS + F ++ + + SI + +E + N
Sbjct: 39 NSNIQGKHYTQVGED--ADNSFISENTPKNTFESTQTYENLESISKNEPTSEASKPLLNE 96
Query: 458 ITKTTSGDKPPPIQEEP------DCEPEYPQSPIPASP 553
+ + PP+ EP EP P P+P P
Sbjct: 97 LVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEP 134
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 488 PPIQEEPDCEPEYP-QSPIPASPTRYTKC 571
PP+ +EP E P + P+P P T C
Sbjct: 123 PPLPDEPVPEEPLPGEPPLPNEPVPETNC 151
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 350 PLQKVRLFSTSPPPDYISSIEDKKAITELKELKKNYITKTTSGDKPPPIQEEPDCEPEYP 529
PL++ F+ S D++ S+ K T+L Y K D+PP + P
Sbjct: 47 PLEESNGFTISEHDDFVKSVPRKNNPTDLL-----YSGKLLDSDEPPSVHGNSSKVPSKH 101
Query: 530 QSP 538
SP
Sbjct: 102 PSP 104
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 365 RLFSTSPPPDYISSIEDKKAITELKELKKNYITKTTSGDKPPPIQEEPDCEPEYPQSPIP 544
R +S S D S++ + A+ E++ K+ K QEE D + S P
Sbjct: 169 RAYSISSNHDNESTLTEGIALKEIESPDKD--RKADGIVNLSVTQEEDDNHQSFNSSLTP 226
Query: 545 ASPTRYTKCKGFLLS 589
+ PT Y + F ++
Sbjct: 227 SQPTTYNRANFFSIN 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,820
Number of Sequences: 5004
Number of extensions: 63544
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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